miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5908 5' -53.5 NC_001806.1 + 58682 0.79 0.358025
Target:  5'- aCCAGCGUGCgaaacGGGGcCUGGCCCGUGa -3'
miRNA:   3'- cGGUCGCGCGa----UCUUuGACUGGGUAC- -5'
5908 5' -53.5 NC_001806.1 + 24619 0.76 0.49315
Target:  5'- cGCCugcGCGCGCUGGGGccugggcgcgccGCUGcgGCCCGUGu -3'
miRNA:   3'- -CGGu--CGCGCGAUCUU------------UGAC--UGGGUAC- -5'
5908 5' -53.5 NC_001806.1 + 147688 0.75 0.543234
Target:  5'- gGCCGGgGCGC-GGggGCgGGCCCcgGa -3'
miRNA:   3'- -CGGUCgCGCGaUCuuUGaCUGGGuaC- -5'
5908 5' -53.5 NC_001806.1 + 55381 0.73 0.668124
Target:  5'- aGCCGGaGCGauugggGGGGACgGACCCAUGg -3'
miRNA:   3'- -CGGUCgCGCga----UCUUUGaCUGGGUAC- -5'
5908 5' -53.5 NC_001806.1 + 66643 0.73 0.678537
Target:  5'- gGCCGGCuccaacccGCGCgggGGGAGCUGGCUCuUGa -3'
miRNA:   3'- -CGGUCG--------CGCGa--UCUUUGACUGGGuAC- -5'
5908 5' -53.5 NC_001806.1 + 119202 0.72 0.709497
Target:  5'- cGCCGGcCGCGaaGGAGGCUGcgGCCCAc- -3'
miRNA:   3'- -CGGUC-GCGCgaUCUUUGAC--UGGGUac -5'
5908 5' -53.5 NC_001806.1 + 44382 0.72 0.739838
Target:  5'- aGCCAGCGCG-UAGGAAC-GACCa--- -3'
miRNA:   3'- -CGGUCGCGCgAUCUUUGaCUGGguac -5'
5908 5' -53.5 NC_001806.1 + 144227 0.71 0.750755
Target:  5'- aGCCGGCGCGCgcacucacaagcggcAGAGGCagaaaGGCCCAg- -3'
miRNA:   3'- -CGGUCGCGCGa--------------UCUUUGa----CUGGGUac -5'
5908 5' -53.5 NC_001806.1 + 108871 0.71 0.778867
Target:  5'- cGCCAGCGCGUcgcGAAACa-GCCCGUu -3'
miRNA:   3'- -CGGUCGCGCGau-CUUUGacUGGGUAc -5'
5908 5' -53.5 NC_001806.1 + 28170 0.71 0.797593
Target:  5'- cCCAGCGCGaggugAGggGCcgGGCgCCAUGu -3'
miRNA:   3'- cGGUCGCGCga---UCuuUGa-CUG-GGUAC- -5'
5908 5' -53.5 NC_001806.1 + 3297 0.7 0.833093
Target:  5'- cGUCGGCGUGCggcggcggcggGGAAGCggGGCCCGc- -3'
miRNA:   3'- -CGGUCGCGCGa----------UCUUUGa-CUGGGUac -5'
5908 5' -53.5 NC_001806.1 + 73626 0.7 0.841509
Target:  5'- cGCCuG-GCGCUGgcGAAGCUGAUCCuuGUGg -3'
miRNA:   3'- -CGGuCgCGCGAU--CUUUGACUGGG--UAC- -5'
5908 5' -53.5 NC_001806.1 + 24303 0.7 0.844821
Target:  5'- gGCCGGCgGCGC-GGGAccugcgccgcacgguGCUGGCCUcgGg -3'
miRNA:   3'- -CGGUCG-CGCGaUCUU---------------UGACUGGGuaC- -5'
5908 5' -53.5 NC_001806.1 + 34324 0.69 0.849727
Target:  5'- cGCCGGacgggGCGCUGGAGAUaacGGCCCccGg -3'
miRNA:   3'- -CGGUCg----CGCGAUCUUUGa--CUGGGuaC- -5'
5908 5' -53.5 NC_001806.1 + 26643 0.69 0.857737
Target:  5'- aGCCGGCGC-C-AGAGGCccGGCCCAc- -3'
miRNA:   3'- -CGGUCGCGcGaUCUUUGa-CUGGGUac -5'
5908 5' -53.5 NC_001806.1 + 24575 0.69 0.863992
Target:  5'- cCCGGCGCGCcggacuucugcgAGGAGgaGGCCCAc- -3'
miRNA:   3'- cGGUCGCGCGa-----------UCUUUgaCUGGGUac -5'
5908 5' -53.5 NC_001806.1 + 18099 0.69 0.865533
Target:  5'- gGCCguGGUcCGCaAGAAACUGACCCu-- -3'
miRNA:   3'- -CGG--UCGcGCGaUCUUUGACUGGGuac -5'
5908 5' -53.5 NC_001806.1 + 68614 0.68 0.901099
Target:  5'- cGCCAGUGCGCcgUGGAGuggauagaccGCUGGCaaaCCGUc -3'
miRNA:   3'- -CGGUCGCGCG--AUCUU----------UGACUG---GGUAc -5'
5908 5' -53.5 NC_001806.1 + 95284 0.68 0.901099
Target:  5'- uGCUGGCGCGCaUGGggGCggggGGCgCGg- -3'
miRNA:   3'- -CGGUCGCGCG-AUCuuUGa---CUGgGUac -5'
5908 5' -53.5 NC_001806.1 + 41521 0.68 0.901099
Target:  5'- gGCCAGCGCgGCaaaugcCUGuCCCGUGg -3'
miRNA:   3'- -CGGUCGCG-CGaucuuuGACuGGGUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.