miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5911 3' -57.1 NC_001806.1 + 1538 0.67 0.811401
Target:  5'- --aGUCC-CUCCGCGGCccGCGCcaccgGGCc -3'
miRNA:   3'- agaUAGGuGAGGUGCCG--CGUGa----CCGc -5'
5911 3' -57.1 NC_001806.1 + 1950 0.66 0.882236
Target:  5'- cCgcgCCGCcggccagCgCACGGCGCACUgcacGGCGg -3'
miRNA:   3'- aGauaGGUGa------G-GUGCCGCGUGA----CCGC- -5'
5911 3' -57.1 NC_001806.1 + 2755 0.68 0.78464
Target:  5'- -----aCACggCCACGGgGCGCgGGCGg -3'
miRNA:   3'- agauagGUGa-GGUGCCgCGUGaCCGC- -5'
5911 3' -57.1 NC_001806.1 + 3335 0.7 0.64757
Target:  5'- --gGUCC-CUCCggccGCGGgGgGCUGGCGg -3'
miRNA:   3'- agaUAGGuGAGG----UGCCgCgUGACCGC- -5'
5911 3' -57.1 NC_001806.1 + 10101 0.74 0.40709
Target:  5'- --cGUCCACguacUCGCGGCGCAC-GGCGc -3'
miRNA:   3'- agaUAGGUGa---GGUGCCGCGUGaCCGC- -5'
5911 3' -57.1 NC_001806.1 + 24077 0.67 0.811401
Target:  5'- -gUGUCgGCg-CugGGCGCACagGGCGu -3'
miRNA:   3'- agAUAGgUGagGugCCGCGUGa-CCGC- -5'
5911 3' -57.1 NC_001806.1 + 24606 0.66 0.852696
Target:  5'- ----cCCACUCgCACGccgccugcGCGCGCUGGgGc -3'
miRNA:   3'- agauaGGUGAG-GUGC--------CGCGUGACCgC- -5'
5911 3' -57.1 NC_001806.1 + 24841 0.66 0.867884
Target:  5'- cUCgg-CCACgggCCgcaGCGGCaccGUGCUGGCGg -3'
miRNA:   3'- -AGauaGGUGa--GG---UGCCG---CGUGACCGC- -5'
5911 3' -57.1 NC_001806.1 + 29955 0.66 0.882236
Target:  5'- ----gUCGCgagCCGCGGCGCcGCggggGGCGu -3'
miRNA:   3'- agauaGGUGa--GGUGCCGCG-UGa---CCGC- -5'
5911 3' -57.1 NC_001806.1 + 42238 0.69 0.688007
Target:  5'- ----gCCGCggccCCGCgGGCGUACUGGCu -3'
miRNA:   3'- agauaGGUGa---GGUG-CCGCGUGACCGc -5'
5911 3' -57.1 NC_001806.1 + 46422 0.67 0.828455
Target:  5'- gUCU-UCUGCgCCGCGGUcggGCGcCUGGCGg -3'
miRNA:   3'- -AGAuAGGUGaGGUGCCG---CGU-GACCGC- -5'
5911 3' -57.1 NC_001806.1 + 51313 0.66 0.875167
Target:  5'- cCUG-CCAaccugaUCCGCGGCGacaACgcgGGCGu -3'
miRNA:   3'- aGAUaGGUg-----AGGUGCCGCg--UGa--CCGC- -5'
5911 3' -57.1 NC_001806.1 + 67191 0.68 0.750942
Target:  5'- cUCgcccagCCGCUCggucugccggccuggCGgGGCGCGCUGGUGg -3'
miRNA:   3'- -AGaua---GGUGAG---------------GUgCCGCGUGACCGC- -5'
5911 3' -57.1 NC_001806.1 + 69883 0.67 0.799969
Target:  5'- cUCUGUCCACcuggCCGCGGCGacccagaucCGCUuccccgcccucgagGGCa -3'
miRNA:   3'- -AGAUAGGUGa---GGUGCCGC---------GUGA--------------CCGc -5'
5911 3' -57.1 NC_001806.1 + 70628 0.67 0.820012
Target:  5'- ----aCCGaaaCCACGGCGCAcCUGGgGg -3'
miRNA:   3'- agauaGGUga-GGUGCCGCGU-GACCgC- -5'
5911 3' -57.1 NC_001806.1 + 70786 0.67 0.836721
Target:  5'- --gGUCCccggguuuuGCUUCAUGggucaguuucuaGCGCGCUGGCGg -3'
miRNA:   3'- agaUAGG---------UGAGGUGC------------CGCGUGACCGC- -5'
5911 3' -57.1 NC_001806.1 + 76283 0.66 0.881538
Target:  5'- cCUGgccgCCGCcgcggaggagauaUCCGCGGUGCGCaacgacccGGCGg -3'
miRNA:   3'- aGAUa---GGUG-------------AGGUGCCGCGUGa-------CCGC- -5'
5911 3' -57.1 NC_001806.1 + 78632 0.66 0.875167
Target:  5'- ----aCCGCacccCCGCGGCGCGCguuacGGCc -3'
miRNA:   3'- agauaGGUGa---GGUGCCGCGUGa----CCGc -5'
5911 3' -57.1 NC_001806.1 + 78672 0.68 0.756662
Target:  5'- gCUGgcggCaguGCUCCugGGCGCGCccgucgucgUGGCGc -3'
miRNA:   3'- aGAUa---Gg--UGAGGugCCGCGUG---------ACCGC- -5'
5911 3' -57.1 NC_001806.1 + 86375 0.69 0.707984
Target:  5'- ----gCCACUCCuccGCGGgGCGCUcGGCu -3'
miRNA:   3'- agauaGGUGAGG---UGCCgCGUGA-CCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.