Results 61 - 80 of 189 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5911 | 5' | -67.1 | NC_001806.1 | + | 66813 | 0.67 | 0.388335 |
Target: 5'- cGGCCgagCGGGGCCGgcCCGgguggcCGGUGUGCGc -3' miRNA: 3'- -CCGGg--GUCCCGGC--GGC------GCCACGCGUc -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 26951 | 0.67 | 0.388335 |
Target: 5'- gGGCCUCGGccgcccgccuGGCgCGCCGCGGcuCGUGGg -3' miRNA: 3'- -CCGGGGUC----------CCG-GCGGCGCCacGCGUC- -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 24837 | 0.67 | 0.388335 |
Target: 5'- gGGCCUCGgccacGGGCCGCaGCGGcaccGUGCuGg -3' miRNA: 3'- -CCGGGGU-----CCCGGCGgCGCCa---CGCGuC- -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 115230 | 0.67 | 0.380605 |
Target: 5'- -cCCCCGGGgacgcGCCGCCGgGG-GCGUu- -3' miRNA: 3'- ccGGGGUCC-----CGGCGGCgCCaCGCGuc -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 30178 | 0.67 | 0.380605 |
Target: 5'- cGCCCC-GGGCCccccgcguCCGCGGccGCGuCGGg -3' miRNA: 3'- cCGGGGuCCCGGc-------GGCGCCa-CGC-GUC- -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 4309 | 0.67 | 0.380605 |
Target: 5'- cGGCCCguGGcGUCGCgGCcGGccaccgccGCGCGGg -3' miRNA: 3'- -CCGGGguCC-CGGCGgCG-CCa-------CGCGUC- -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 22122 | 0.67 | 0.372978 |
Target: 5'- gGGCCUCugGGGGgCGCCcgagGCGGaggagGCGCGa -3' miRNA: 3'- -CCGGGG--UCCCgGCGG----CGCCa----CGCGUc -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 69397 | 0.67 | 0.372978 |
Target: 5'- cGGCCCUggaGGGGUUucugGCgGCGGgcguccccGCGCGGa -3' miRNA: 3'- -CCGGGG---UCCCGG----CGgCGCCa-------CGCGUC- -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 88654 | 0.67 | 0.372978 |
Target: 5'- cGCgCCCGGGGaCUcgcgcaggGCCGCGGccaUGCGCu- -3' miRNA: 3'- cCG-GGGUCCC-GG--------CGGCGCC---ACGCGuc -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 99931 | 0.67 | 0.372978 |
Target: 5'- uGGUCCCGggagaauggcGGGCCGCgCGCcGGgagucgaccccGCGCGGc -3' miRNA: 3'- -CCGGGGU----------CCCGGCG-GCG-CCa----------CGCGUC- -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 136363 | 0.67 | 0.372978 |
Target: 5'- --aCCCGGGGCCGgCGCGcucCGCGGc -3' miRNA: 3'- ccgGGGUCCCGGCgGCGCcacGCGUC- -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 144603 | 0.67 | 0.372978 |
Target: 5'- gGGCCCCccugcagccGGGGCgGCCaaGGgGCGuCGGc -3' miRNA: 3'- -CCGGGG---------UCCCGgCGGcgCCaCGC-GUC- -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 147705 | 0.68 | 0.332222 |
Target: 5'- nGGCCCCGGaGGCggcgcucgcaCGCacggggccacggccgCGCGGgggcGCGCGGg -3' miRNA: 3'- -CCGGGGUC-CCG----------GCG---------------GCGCCa---CGCGUC- -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 67355 | 0.68 | 0.335725 |
Target: 5'- aGCCgaUCAGGGCCGCCcccccgcGCauGGUGCcccGCAGg -3' miRNA: 3'- cCGG--GGUCCCGGCGG-------CG--CCACG---CGUC- -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 4062 | 0.68 | 0.336429 |
Target: 5'- gGGCgCCCAcacGGCCGCCG-GG-GCGCc- -3' miRNA: 3'- -CCG-GGGUc--CCGGCGGCgCCaCGCGuc -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 33341 | 0.68 | 0.336429 |
Target: 5'- cGCCCCuuGGCCGCCcCGGc-UGCAGg -3' miRNA: 3'- cCGGGGucCCGGCGGcGCCacGCGUC- -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 37926 | 0.68 | 0.336429 |
Target: 5'- gGGCgCCGGGGCCGuCCGUccaccccgccccGGgGCGgGGu -3' miRNA: 3'- -CCGgGGUCCCGGC-GGCG------------CCaCGCgUC- -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 81468 | 0.68 | 0.336429 |
Target: 5'- cGGCCCCuuGGGuGCC-CUGgGG-GUGCGGg -3' miRNA: 3'- -CCGGGG--UCC-CGGcGGCgCCaCGCGUC- -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 24218 | 0.68 | 0.336429 |
Target: 5'- uGGCCCgCcgacGGGC--CCGCGGUGuCGCGGc -3' miRNA: 3'- -CCGGG-Gu---CCCGgcGGCGCCAC-GCGUC- -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 46106 | 0.68 | 0.32944 |
Target: 5'- cGG-CCCGGGGCCuG-CGCGG-GCGCc- -3' miRNA: 3'- -CCgGGGUCCCGG-CgGCGCCaCGCGuc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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