miRNA display CGI


Results 81 - 100 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5911 5' -67.1 NC_001806.1 + 93918 0.68 0.302561
Target:  5'- gGGaCCCCGGGGCucagccagaCGCCG-GGUaGCGUAc -3'
miRNA:   3'- -CC-GGGGUCCCG---------GCGGCgCCA-CGCGUc -5'
5911 5' -67.1 NC_001806.1 + 89270 0.68 0.302561
Target:  5'- uGGCUCCgcgAGGGCCG--GCGG-GCGCAa -3'
miRNA:   3'- -CCGGGG---UCCCGGCggCGCCaCGCGUc -5'
5911 5' -67.1 NC_001806.1 + 9745 0.68 0.301911
Target:  5'- cGCCCCuaaccgcAGGG-CGCCGUGGguuggggGCGCGu -3'
miRNA:   3'- cCGGGG-------UCCCgGCGGCGCCa------CGCGUc -5'
5911 5' -67.1 NC_001806.1 + 130432 0.68 0.325298
Target:  5'- cGCCCuCAGGGCCcaGCgcgaucuacgggagcUGCGGUGC-CGGg -3'
miRNA:   3'- cCGGG-GUCCCGG--CG---------------GCGCCACGcGUC- -5'
5911 5' -67.1 NC_001806.1 + 132746 0.68 0.327364
Target:  5'- uGGCCUCGGcGGCagccggaugccuccUGcCCGCGGUGCGgGa -3'
miRNA:   3'- -CCGGGGUC-CCG--------------GC-GGCGCCACGCgUc -5'
5911 5' -67.1 NC_001806.1 + 4822 0.68 0.32944
Target:  5'- gGGgUCCGGGGCggcgagGCCGCGGggucggGCGuCGGg -3'
miRNA:   3'- -CCgGGGUCCCGg-----CGGCGCCa-----CGC-GUC- -5'
5911 5' -67.1 NC_001806.1 + 34418 0.68 0.336429
Target:  5'- gGGCCgggCC-GGGCCggGCCG-GGUGgGCGGg -3'
miRNA:   3'- -CCGG---GGuCCCGG--CGGCgCCACgCGUC- -5'
5911 5' -67.1 NC_001806.1 + 24218 0.68 0.336429
Target:  5'- uGGCCCgCcgacGGGC--CCGCGGUGuCGCGGc -3'
miRNA:   3'- -CCGGG-Gu---CCCGgcGGCGCCAC-GCGUC- -5'
5911 5' -67.1 NC_001806.1 + 81468 0.68 0.336429
Target:  5'- cGGCCCCuuGGGuGCC-CUGgGG-GUGCGGg -3'
miRNA:   3'- -CCGGGG--UCC-CGGcGGCgCCaCGCGUC- -5'
5911 5' -67.1 NC_001806.1 + 37926 0.68 0.336429
Target:  5'- gGGCgCCGGGGCCGuCCGUccaccccgccccGGgGCGgGGu -3'
miRNA:   3'- -CCGgGGUCCCGGC-GGCG------------CCaCGCgUC- -5'
5911 5' -67.1 NC_001806.1 + 33341 0.68 0.336429
Target:  5'- cGCCCCuuGGCCGCCcCGGc-UGCAGg -3'
miRNA:   3'- cCGGGGucCCGGCGGcGCCacGCGUC- -5'
5911 5' -67.1 NC_001806.1 + 4062 0.68 0.336429
Target:  5'- gGGCgCCCAcacGGCCGCCG-GG-GCGCc- -3'
miRNA:   3'- -CCG-GGGUc--CCGGCGGCgCCaCGCGuc -5'
5911 5' -67.1 NC_001806.1 + 67355 0.68 0.335725
Target:  5'- aGCCgaUCAGGGCCGCCcccccgcGCauGGUGCcccGCAGg -3'
miRNA:   3'- cCGG--GGUCCCGGCGG-------CG--CCACG---CGUC- -5'
5911 5' -67.1 NC_001806.1 + 147705 0.68 0.332222
Target:  5'- nGGCCCCGGaGGCggcgcucgcaCGCacggggccacggccgCGCGGgggcGCGCGGg -3'
miRNA:   3'- -CCGGGGUC-CCG----------GCG---------------GCGCCa---CGCGUC- -5'
5911 5' -67.1 NC_001806.1 + 46106 0.68 0.32944
Target:  5'- cGG-CCCGGGGCCuG-CGCGG-GCGCc- -3'
miRNA:   3'- -CCgGGGUCCCGG-CgGCGCCaCGCGuc -5'
5911 5' -67.1 NC_001806.1 + 27237 0.68 0.32944
Target:  5'- cGCCCuCAcagggcGGGCCGCCuCGG-GgGCGGg -3'
miRNA:   3'- cCGGG-GU------CCCGGCGGcGCCaCgCGUC- -5'
5911 5' -67.1 NC_001806.1 + 57041 0.68 0.32944
Target:  5'- cGGgCCCGGGGCCGgggcCCcCGGcUGCGUg- -3'
miRNA:   3'- -CCgGGGUCCCGGC----GGcGCC-ACGCGuc -5'
5911 5' -67.1 NC_001806.1 + 55494 0.69 0.296111
Target:  5'- gGGCCaauGGGUCGCgGCGGU-CGCAc -3'
miRNA:   3'- -CCGGgguCCCGGCGgCGCCAcGCGUc -5'
5911 5' -67.1 NC_001806.1 + 28154 0.69 0.296111
Target:  5'- cGGCCUgAGGGCCGCCcCca-GCGCGa -3'
miRNA:   3'- -CCGGGgUCCCGGCGGcGccaCGCGUc -5'
5911 5' -67.1 NC_001806.1 + 3142 0.69 0.295472
Target:  5'- gGGgCCCAGGGCC-CCGgcgaccaggcucaCGGcGCGCAc -3'
miRNA:   3'- -CCgGGGUCCCGGcGGC-------------GCCaCGCGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.