miRNA display CGI


Results 101 - 120 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5911 5' -67.1 NC_001806.1 + 113095 0.69 0.277404
Target:  5'- cGGCCCCGGccGGCCccGCCGCaGacaUGCaGCAGc -3'
miRNA:   3'- -CCGGGGUC--CCGG--CGGCGcC---ACG-CGUC- -5'
5911 5' -67.1 NC_001806.1 + 3519 0.69 0.276796
Target:  5'- cGGCgUCGGGGUCGucgccccCCGCGGgggaggcggGCGCGGc -3'
miRNA:   3'- -CCGgGGUCCCGGC-------GGCGCCa--------CGCGUC- -5'
5911 5' -67.1 NC_001806.1 + 21148 0.69 0.271381
Target:  5'- gGGCCCCAccgacGGGCCGCCGCccaccccgaGCcCAGa -3'
miRNA:   3'- -CCGGGGU-----CCCGGCGGCGcca------CGcGUC- -5'
5911 5' -67.1 NC_001806.1 + 136536 0.69 0.265463
Target:  5'- gGGCCgCUcGGGCCGCC-CGGcGCaaaGCAGg -3'
miRNA:   3'- -CCGG-GGuCCCGGCGGcGCCaCG---CGUC- -5'
5911 5' -67.1 NC_001806.1 + 1627 0.69 0.265463
Target:  5'- aGGCCCCAGcGCgCGCagGCGGcGUGCGa -3'
miRNA:   3'- -CCGGGGUCcCG-GCGg-CGCCaCGCGUc -5'
5911 5' -67.1 NC_001806.1 + 30284 0.69 0.261963
Target:  5'- cGGcCCCCGGGGCgGagccggccgcccgccCCGCGGacGCGCGc -3'
miRNA:   3'- -CC-GGGGUCCCGgC---------------GGCGCCa-CGCGUc -5'
5911 5' -67.1 NC_001806.1 + 83719 0.69 0.259651
Target:  5'- -uCCCCGGGaGCCGCCaaGGUGCaGUAc -3'
miRNA:   3'- ccGGGGUCC-CGGCGGcgCCACG-CGUc -5'
5911 5' -67.1 NC_001806.1 + 92932 0.69 0.279842
Target:  5'- gGGCCuggaggCCGGGGCCcgcgcgcugauggacGCCGUGGacGCGCAu -3'
miRNA:   3'- -CCGG------GGUCCCGG---------------CGGCGCCa-CGCGUc -5'
5911 5' -67.1 NC_001806.1 + 141400 0.69 0.282915
Target:  5'- uGCCCCAGagcauaaacaccaGGCCGggGCGGcGCGCGGc -3'
miRNA:   3'- cCGGGGUC-------------CCGGCggCGCCaCGCGUC- -5'
5911 5' -67.1 NC_001806.1 + 23068 0.69 0.283533
Target:  5'- aGGCCgCCGuGGCCGCCGUGc-GCGCc- -3'
miRNA:   3'- -CCGG-GGUcCCGGCGGCGCcaCGCGuc -5'
5911 5' -67.1 NC_001806.1 + 55494 0.69 0.296111
Target:  5'- gGGCCaauGGGUCGCgGCGGU-CGCAc -3'
miRNA:   3'- -CCGGgguCCCGGCGgCGCCAcGCGUc -5'
5911 5' -67.1 NC_001806.1 + 28154 0.69 0.296111
Target:  5'- cGGCCUgAGGGCCGCCcCca-GCGCGa -3'
miRNA:   3'- -CCGGGgUCCCGGCGGcGccaCGCGUc -5'
5911 5' -67.1 NC_001806.1 + 3142 0.69 0.295472
Target:  5'- gGGgCCCAGGGCC-CCGgcgaccaggcucaCGGcGCGCAc -3'
miRNA:   3'- -CCgGGGUCCCGGcGGC-------------GCCaCGCGUc -5'
5911 5' -67.1 NC_001806.1 + 44734 0.69 0.289768
Target:  5'- cGGCCCCgguuggagggGGGGgCGCCaguuGCGGgaacUGcCGCAGg -3'
miRNA:   3'- -CCGGGG----------UCCCgGCGG----CGCC----AC-GCGUC- -5'
5911 5' -67.1 NC_001806.1 + 102190 0.69 0.289768
Target:  5'- --gCCCAGGGCCGUuaugguguuCGCGGUugccCGCAGc -3'
miRNA:   3'- ccgGGGUCCCGGCG---------GCGCCAc---GCGUC- -5'
5911 5' -67.1 NC_001806.1 + 28526 0.69 0.289768
Target:  5'- aGGgCCCGGGGUCGCCGUGGg------ -3'
miRNA:   3'- -CCgGGGUCCCGGCGGCGCCacgcguc -5'
5911 5' -67.1 NC_001806.1 + 2454 0.69 0.289768
Target:  5'- cGGcCCCCGGcGGCC-CCGUGGggGUGgGGg -3'
miRNA:   3'- -CC-GGGGUC-CCGGcGGCGCCa-CGCgUC- -5'
5911 5' -67.1 NC_001806.1 + 43485 0.69 0.286014
Target:  5'- aGGCCCCcacgaucgacGGGGCCGUgGCGGcccaucaggacaagaUGCgGCGc -3'
miRNA:   3'- -CCGGGG----------UCCCGGCGgCGCC---------------ACG-CGUc -5'
5911 5' -67.1 NC_001806.1 + 1379 0.69 0.283533
Target:  5'- cGGCCCCc--GCCGCCGCcagcacGGUGCcgcuGCGGc -3'
miRNA:   3'- -CCGGGGuccCGGCGGCG------CCACG----CGUC- -5'
5911 5' -67.1 NC_001806.1 + 3569 0.69 0.259651
Target:  5'- cGCCCCAGGGCgGCgaggaucccCGCGGcGCcguacccgGCGGg -3'
miRNA:   3'- cCGGGGUCCCGgCG---------GCGCCaCG--------CGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.