miRNA display CGI


Results 41 - 60 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5911 5' -67.1 NC_001806.1 + 98024 0.71 0.21193
Target:  5'- cGGCCaCCGuGGGCCGgCG-GGUgagcGCGCGGa -3'
miRNA:   3'- -CCGG-GGU-CCCGGCgGCgCCA----CGCGUC- -5'
5911 5' -67.1 NC_001806.1 + 151162 0.71 0.20712
Target:  5'- aGGCgCgCCAGGuGCU-CCGCGGUgacGCGCAGg -3'
miRNA:   3'- -CCG-G-GGUCC-CGGcGGCGCCA---CGCGUC- -5'
5911 5' -67.1 NC_001806.1 + 73303 0.71 0.202405
Target:  5'- uGGCCCgCGaGGUCGCCGCGuGUuCGCGGc -3'
miRNA:   3'- -CCGGG-GUcCCGGCGGCGC-CAcGCGUC- -5'
5911 5' -67.1 NC_001806.1 + 76486 0.71 0.188816
Target:  5'- uGGCCgauaCCAaGGaCGCCGUGGUGCGCGc -3'
miRNA:   3'- -CCGG----GGUcCCgGCGGCGCCACGCGUc -5'
5911 5' -67.1 NC_001806.1 + 54785 0.71 0.21193
Target:  5'- cGGCagcaCCAGGGCCaGCC-CGGUG-GCAu -3'
miRNA:   3'- -CCGg---GGUCCCGG-CGGcGCCACgCGUc -5'
5911 5' -67.1 NC_001806.1 + 88365 0.71 0.21193
Target:  5'- aGGCCaUCGGGGCCGCCGgcUGGgcuaGCGUg- -3'
miRNA:   3'- -CCGG-GGUCCCGGCGGC--GCCa---CGCGuc -5'
5911 5' -67.1 NC_001806.1 + 4453 0.71 0.193254
Target:  5'- cGCCCgGGGGCUGCCGgCGccGCGCu- -3'
miRNA:   3'- cCGGGgUCCCGGCGGC-GCcaCGCGuc -5'
5911 5' -67.1 NC_001806.1 + 151290 0.71 0.216835
Target:  5'- gGGCCggGGGGCgGCgGCGGUGgGcCGGg -3'
miRNA:   3'- -CCGGggUCCCGgCGgCGCCACgC-GUC- -5'
5911 5' -67.1 NC_001806.1 + 25415 0.71 0.21193
Target:  5'- gGGCga-GGGGCgGUgGUGGUGCGCGGg -3'
miRNA:   3'- -CCGgggUCCCGgCGgCGCCACGCGUC- -5'
5911 5' -67.1 NC_001806.1 + 102257 0.7 0.232137
Target:  5'- uGGCCCCGGcugaGGaaCGCgGCGGcgGCGCGGu -3'
miRNA:   3'- -CCGGGGUC----CCg-GCGgCGCCa-CGCGUC- -5'
5911 5' -67.1 NC_001806.1 + 21888 0.7 0.242836
Target:  5'- cGGCCuCCGcGGGCCgcaucgagcGCCGcCGGgcccGCGCGGc -3'
miRNA:   3'- -CCGG-GGU-CCCGG---------CGGC-GCCa---CGCGUC- -5'
5911 5' -67.1 NC_001806.1 + 4373 0.7 0.247783
Target:  5'- aGGCCgCGGGgguccucGCCGCCGCccGGggcuuggGCGCGGc -3'
miRNA:   3'- -CCGGgGUCC-------CGGCGGCG--CCa------CGCGUC- -5'
5911 5' -67.1 NC_001806.1 + 2733 0.7 0.248338
Target:  5'- gGGCCCUcggcGGGCCGgCGCgacacggccacGGgGCGCGGg -3'
miRNA:   3'- -CCGGGGu---CCCGGCgGCG-----------CCaCGCGUC- -5'
5911 5' -67.1 NC_001806.1 + 84078 0.7 0.237436
Target:  5'- gGGCCCCAGcugcgcGCUGCCGCGGaggcccgucGCGCc- -3'
miRNA:   3'- -CCGGGGUCc-----CGGCGGCGCCa--------CGCGuc -5'
5911 5' -67.1 NC_001806.1 + 9188 0.7 0.248338
Target:  5'- aGCCCgGGGGUCGCgggUGUGGcgaggGCGCGGu -3'
miRNA:   3'- cCGGGgUCCCGGCG---GCGCCa----CGCGUC- -5'
5911 5' -67.1 NC_001806.1 + 3024 0.7 0.253943
Target:  5'- cGGCgUCCGGugcgcuGGCCGCCGCcgccagcaGGggGCGCAGg -3'
miRNA:   3'- -CCG-GGGUC------CCGGCGGCG--------CCa-CGCGUC- -5'
5911 5' -67.1 NC_001806.1 + 151538 0.7 0.253943
Target:  5'- cGCCCguGGGCCcgggcgGCCGgGGgcgGCGgGGg -3'
miRNA:   3'- cCGGGguCCCGG------CGGCgCCa--CGCgUC- -5'
5911 5' -67.1 NC_001806.1 + 76235 0.7 0.221838
Target:  5'- cGCCCUccGGGCCGaCgCGCGGcGCGCGa -3'
miRNA:   3'- cCGGGGu-CCCGGC-G-GCGCCaCGCGUc -5'
5911 5' -67.1 NC_001806.1 + 23947 0.7 0.221333
Target:  5'- gGGCCUgggGGGGCCGCCggaGUGGUccgccgaGCGCGGc -3'
miRNA:   3'- -CCGGGg--UCCCGGCGG---CGCCA-------CGCGUC- -5'
5911 5' -67.1 NC_001806.1 + 56823 0.7 0.221838
Target:  5'- cGCCCCcGGGCCcgccaacaccGCCGCGGccaGgGCGGc -3'
miRNA:   3'- cCGGGGuCCCGG----------CGGCGCCa--CgCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.