Results 81 - 100 of 189 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
5911 | 5' | -67.1 | NC_001806.1 | + | 70330 | 0.69 | 0.259651 |
Target: 5'- cGCCCU--GGCCGCCcggGgGGUGCuGCAGg -3' miRNA: 3'- cCGGGGucCCGGCGG---CgCCACG-CGUC- -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 3519 | 0.69 | 0.276796 |
Target: 5'- cGGCgUCGGGGUCGucgccccCCGCGGgggaggcggGCGCGGc -3' miRNA: 3'- -CCGgGGUCCCGGC-------GGCGCCa--------CGCGUC- -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 3086 | 0.69 | 0.277404 |
Target: 5'- aGGUCCgCGGcggcGGCgGCCGCGGagcucggcagGCGCGGg -3' miRNA: 3'- -CCGGG-GUC----CCGgCGGCGCCa---------CGCGUC- -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 113095 | 0.69 | 0.277404 |
Target: 5'- cGGCCCCGGccGGCCccGCCGCaGacaUGCaGCAGc -3' miRNA: 3'- -CCGGGGUC--CCGG--CGGCGcC---ACG-CGUC- -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 23068 | 0.69 | 0.283533 |
Target: 5'- aGGCCgCCGuGGCCGCCGUGc-GCGCc- -3' miRNA: 3'- -CCGG-GGUcCCGGCGGCGCcaCGCGuc -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 1379 | 0.69 | 0.283533 |
Target: 5'- cGGCCCCc--GCCGCCGCcagcacGGUGCcgcuGCGGc -3' miRNA: 3'- -CCGGGGuccCGGCGGCG------CCACG----CGUC- -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 1627 | 0.69 | 0.265463 |
Target: 5'- aGGCCCCAGcGCgCGCagGCGGcGUGCGa -3' miRNA: 3'- -CCGGGGUCcCG-GCGg-CGCCaCGCGUc -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 44734 | 0.69 | 0.289768 |
Target: 5'- cGGCCCCgguuggagggGGGGgCGCCaguuGCGGgaacUGcCGCAGg -3' miRNA: 3'- -CCGGGG----------UCCCgGCGG----CGCC----AC-GCGUC- -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 21148 | 0.69 | 0.271381 |
Target: 5'- gGGCCCCAccgacGGGCCGCCGCccaccccgaGCcCAGa -3' miRNA: 3'- -CCGGGGU-----CCCGGCGGCGcca------CGcGUC- -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 22179 | 0.69 | 0.277404 |
Target: 5'- cGCCCCGGcGGCCG-UGUGG-GCGCc- -3' miRNA: 3'- cCGGGGUC-CCGGCgGCGCCaCGCGuc -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 141400 | 0.69 | 0.282915 |
Target: 5'- uGCCCCAGagcauaaacaccaGGCCGggGCGGcGCGCGGc -3' miRNA: 3'- cCGGGGUC-------------CCGGCggCGCCaCGCGUC- -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 43485 | 0.69 | 0.286014 |
Target: 5'- aGGCCCCcacgaucgacGGGGCCGUgGCGGcccaucaggacaagaUGCgGCGc -3' miRNA: 3'- -CCGGGG----------UCCCGGCGgCGCC---------------ACG-CGUc -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 9745 | 0.68 | 0.301911 |
Target: 5'- cGCCCCuaaccgcAGGG-CGCCGUGGguuggggGCGCGu -3' miRNA: 3'- cCGGGG-------UCCCgGCGGCGCCa------CGCGUc -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 89270 | 0.68 | 0.302561 |
Target: 5'- uGGCUCCgcgAGGGCCG--GCGG-GCGCAa -3' miRNA: 3'- -CCGGGG---UCCCGGCggCGCCaCGCGUc -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 93918 | 0.68 | 0.302561 |
Target: 5'- gGGaCCCCGGGGCucagccagaCGCCG-GGUaGCGUAc -3' miRNA: 3'- -CC-GGGGUCCCG---------GCGGCgCCA-CGCGUc -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 23790 | 0.68 | 0.302561 |
Target: 5'- -cCCCaCGGGGCCGCCGgGG-GcCGCc- -3' miRNA: 3'- ccGGG-GUCCCGGCGGCgCCaC-GCGuc -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 81935 | 0.68 | 0.309119 |
Target: 5'- cGGCCCCGuacgccucccGGGaCCGCCGgguuCGGcgGCGaCGGg -3' miRNA: 3'- -CCGGGGU----------CCC-GGCGGC----GCCa-CGC-GUC- -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 18844 | 0.68 | 0.311107 |
Target: 5'- uGCCCCAGGuuCCGCCGgacaccugcagcaaaCGGcaccacgUGCGCGGg -3' miRNA: 3'- cCGGGGUCCc-GGCGGC---------------GCC-------ACGCGUC- -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 86024 | 0.68 | 0.315785 |
Target: 5'- uGGCCggggAGGGCaggGCCGCGGgggGgGCGGg -3' miRNA: 3'- -CCGGgg--UCCCGg--CGGCGCCa--CgCGUC- -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 15848 | 0.68 | 0.315785 |
Target: 5'- gGGCCCCuuuuGGGGCCGCgGgGG-GC-CGa -3' miRNA: 3'- -CCGGGG----UCCCGGCGgCgCCaCGcGUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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