miRNA display CGI


Results 61 - 80 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5911 5' -67.1 NC_001806.1 + 4373 0.7 0.247783
Target:  5'- aGGCCgCGGGgguccucGCCGCCGCccGGggcuuggGCGCGGc -3'
miRNA:   3'- -CCGGgGUCC-------CGGCGGCG--CCa------CGCGUC- -5'
5911 5' -67.1 NC_001806.1 + 42233 0.7 0.248338
Target:  5'- cGGCCgCCGcGGCC-CCGCGG-GCGUAc -3'
miRNA:   3'- -CCGG-GGUcCCGGcGGCGCCaCGCGUc -5'
5911 5' -67.1 NC_001806.1 + 9188 0.7 0.248338
Target:  5'- aGCCCgGGGGUCGCgggUGUGGcgaggGCGCGGu -3'
miRNA:   3'- cCGGGgUCCCGGCG---GCGCCa----CGCGUC- -5'
5911 5' -67.1 NC_001806.1 + 2733 0.7 0.248338
Target:  5'- gGGCCCUcggcGGGCCGgCGCgacacggccacGGgGCGCGGg -3'
miRNA:   3'- -CCGGGGu---CCCGGCgGCG-----------CCaCGCGUC- -5'
5911 5' -67.1 NC_001806.1 + 3024 0.7 0.253943
Target:  5'- cGGCgUCCGGugcgcuGGCCGCCGCcgccagcaGGggGCGCAGg -3'
miRNA:   3'- -CCG-GGGUC------CCGGCGGCG--------CCa-CGCGUC- -5'
5911 5' -67.1 NC_001806.1 + 151538 0.7 0.253943
Target:  5'- cGCCCguGGGCCcgggcgGCCGgGGgcgGCGgGGg -3'
miRNA:   3'- cCGGGguCCCGG------CGGCgCCa--CGCgUC- -5'
5911 5' -67.1 NC_001806.1 + 3569 0.69 0.259651
Target:  5'- cGCCCCAGGGCgGCgaggaucccCGCGGcGCcguacccgGCGGg -3'
miRNA:   3'- cCGGGGUCCCGgCG---------GCGCCaCG--------CGUC- -5'
5911 5' -67.1 NC_001806.1 + 83719 0.69 0.259651
Target:  5'- -uCCCCGGGaGCCGCCaaGGUGCaGUAc -3'
miRNA:   3'- ccGGGGUCC-CGGCGGcgCCACG-CGUc -5'
5911 5' -67.1 NC_001806.1 + 109078 0.69 0.259651
Target:  5'- cGCCCgCGGGGCCcCCGCGGaGC-CAa -3'
miRNA:   3'- cCGGG-GUCCCGGcGGCGCCaCGcGUc -5'
5911 5' -67.1 NC_001806.1 + 70330 0.69 0.259651
Target:  5'- cGCCCU--GGCCGCCcggGgGGUGCuGCAGg -3'
miRNA:   3'- cCGGGGucCCGGCGG---CgCCACG-CGUC- -5'
5911 5' -67.1 NC_001806.1 + 30284 0.69 0.261963
Target:  5'- cGGcCCCCGGGGCgGagccggccgcccgccCCGCGGacGCGCGc -3'
miRNA:   3'- -CC-GGGGUCCCGgC---------------GGCGCCa-CGCGUc -5'
5911 5' -67.1 NC_001806.1 + 136536 0.69 0.265463
Target:  5'- gGGCCgCUcGGGCCGCC-CGGcGCaaaGCAGg -3'
miRNA:   3'- -CCGG-GGuCCCGGCGGcGCCaCG---CGUC- -5'
5911 5' -67.1 NC_001806.1 + 1627 0.69 0.265463
Target:  5'- aGGCCCCAGcGCgCGCagGCGGcGUGCGa -3'
miRNA:   3'- -CCGGGGUCcCG-GCGg-CGCCaCGCGUc -5'
5911 5' -67.1 NC_001806.1 + 21148 0.69 0.271381
Target:  5'- gGGCCCCAccgacGGGCCGCCGCccaccccgaGCcCAGa -3'
miRNA:   3'- -CCGGGGU-----CCCGGCGGCGcca------CGcGUC- -5'
5911 5' -67.1 NC_001806.1 + 3519 0.69 0.276796
Target:  5'- cGGCgUCGGGGUCGucgccccCCGCGGgggaggcggGCGCGGc -3'
miRNA:   3'- -CCGgGGUCCCGGC-------GGCGCCa--------CGCGUC- -5'
5911 5' -67.1 NC_001806.1 + 3086 0.69 0.277404
Target:  5'- aGGUCCgCGGcggcGGCgGCCGCGGagcucggcagGCGCGGg -3'
miRNA:   3'- -CCGGG-GUC----CCGgCGGCGCCa---------CGCGUC- -5'
5911 5' -67.1 NC_001806.1 + 22179 0.69 0.277404
Target:  5'- cGCCCCGGcGGCCG-UGUGG-GCGCc- -3'
miRNA:   3'- cCGGGGUC-CCGGCgGCGCCaCGCGuc -5'
5911 5' -67.1 NC_001806.1 + 65645 0.69 0.277404
Target:  5'- gGGCCCCGGcGGCCuCCcccuggGUGGcUGCGCuGg -3'
miRNA:   3'- -CCGGGGUC-CCGGcGG------CGCC-ACGCGuC- -5'
5911 5' -67.1 NC_001806.1 + 113095 0.69 0.277404
Target:  5'- cGGCCCCGGccGGCCccGCCGCaGacaUGCaGCAGc -3'
miRNA:   3'- -CCGGGGUC--CCGG--CGGCGcC---ACG-CGUC- -5'
5911 5' -67.1 NC_001806.1 + 92932 0.69 0.279842
Target:  5'- gGGCCuggaggCCGGGGCCcgcgcgcugauggacGCCGUGGacGCGCAu -3'
miRNA:   3'- -CCGG------GGUCCCGG---------------CGGCGCCa-CGCGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.