miRNA display CGI


Results 81 - 100 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5911 5' -67.1 NC_001806.1 + 141400 0.69 0.282915
Target:  5'- uGCCCCAGagcauaaacaccaGGCCGggGCGGcGCGCGGc -3'
miRNA:   3'- cCGGGGUC-------------CCGGCggCGCCaCGCGUC- -5'
5911 5' -67.1 NC_001806.1 + 23068 0.69 0.283533
Target:  5'- aGGCCgCCGuGGCCGCCGUGc-GCGCc- -3'
miRNA:   3'- -CCGG-GGUcCCGGCGGCGCcaCGCGuc -5'
5911 5' -67.1 NC_001806.1 + 1379 0.69 0.283533
Target:  5'- cGGCCCCc--GCCGCCGCcagcacGGUGCcgcuGCGGc -3'
miRNA:   3'- -CCGGGGuccCGGCGGCG------CCACG----CGUC- -5'
5911 5' -67.1 NC_001806.1 + 43485 0.69 0.286014
Target:  5'- aGGCCCCcacgaucgacGGGGCCGUgGCGGcccaucaggacaagaUGCgGCGc -3'
miRNA:   3'- -CCGGGG----------UCCCGGCGgCGCC---------------ACG-CGUc -5'
5911 5' -67.1 NC_001806.1 + 102190 0.69 0.289768
Target:  5'- --gCCCAGGGCCGUuaugguguuCGCGGUugccCGCAGc -3'
miRNA:   3'- ccgGGGUCCCGGCG---------GCGCCAc---GCGUC- -5'
5911 5' -67.1 NC_001806.1 + 28526 0.69 0.289768
Target:  5'- aGGgCCCGGGGUCGCCGUGGg------ -3'
miRNA:   3'- -CCgGGGUCCCGGCGGCGCCacgcguc -5'
5911 5' -67.1 NC_001806.1 + 2454 0.69 0.289768
Target:  5'- cGGcCCCCGGcGGCC-CCGUGGggGUGgGGg -3'
miRNA:   3'- -CC-GGGGUC-CCGGcGGCGCCa-CGCgUC- -5'
5911 5' -67.1 NC_001806.1 + 44734 0.69 0.289768
Target:  5'- cGGCCCCgguuggagggGGGGgCGCCaguuGCGGgaacUGcCGCAGg -3'
miRNA:   3'- -CCGGGG----------UCCCgGCGG----CGCC----AC-GCGUC- -5'
5911 5' -67.1 NC_001806.1 + 3142 0.69 0.295472
Target:  5'- gGGgCCCAGGGCC-CCGgcgaccaggcucaCGGcGCGCAc -3'
miRNA:   3'- -CCgGGGUCCCGGcGGC-------------GCCaCGCGUc -5'
5911 5' -67.1 NC_001806.1 + 28154 0.69 0.296111
Target:  5'- cGGCCUgAGGGCCGCCcCca-GCGCGa -3'
miRNA:   3'- -CCGGGgUCCCGGCGGcGccaCGCGUc -5'
5911 5' -67.1 NC_001806.1 + 55494 0.69 0.296111
Target:  5'- gGGCCaauGGGUCGCgGCGGU-CGCAc -3'
miRNA:   3'- -CCGGgguCCCGGCGgCGCCAcGCGUc -5'
5911 5' -67.1 NC_001806.1 + 1782 0.69 0.296111
Target:  5'- cGGCgugUCC-GGGCCGaaGCGcGUGCGCAc -3'
miRNA:   3'- -CCG---GGGuCCCGGCggCGC-CACGCGUc -5'
5911 5' -67.1 NC_001806.1 + 9745 0.68 0.301911
Target:  5'- cGCCCCuaaccgcAGGG-CGCCGUGGguuggggGCGCGu -3'
miRNA:   3'- cCGGGG-------UCCCgGCGGCGCCa------CGCGUc -5'
5911 5' -67.1 NC_001806.1 + 89270 0.68 0.302561
Target:  5'- uGGCUCCgcgAGGGCCG--GCGG-GCGCAa -3'
miRNA:   3'- -CCGGGG---UCCCGGCggCGCCaCGCGUc -5'
5911 5' -67.1 NC_001806.1 + 93918 0.68 0.302561
Target:  5'- gGGaCCCCGGGGCucagccagaCGCCG-GGUaGCGUAc -3'
miRNA:   3'- -CC-GGGGUCCCG---------GCGGCgCCA-CGCGUc -5'
5911 5' -67.1 NC_001806.1 + 23790 0.68 0.302561
Target:  5'- -cCCCaCGGGGCCGCCGgGG-GcCGCc- -3'
miRNA:   3'- ccGGG-GUCCCGGCGGCgCCaC-GCGuc -5'
5911 5' -67.1 NC_001806.1 + 81935 0.68 0.309119
Target:  5'- cGGCCCCGuacgccucccGGGaCCGCCGgguuCGGcgGCGaCGGg -3'
miRNA:   3'- -CCGGGGU----------CCC-GGCGGC----GCCa-CGC-GUC- -5'
5911 5' -67.1 NC_001806.1 + 18844 0.68 0.311107
Target:  5'- uGCCCCAGGuuCCGCCGgacaccugcagcaaaCGGcaccacgUGCGCGGg -3'
miRNA:   3'- cCGGGGUCCc-GGCGGC---------------GCC-------ACGCGUC- -5'
5911 5' -67.1 NC_001806.1 + 86024 0.68 0.315785
Target:  5'- uGGCCggggAGGGCaggGCCGCGGgggGgGCGGg -3'
miRNA:   3'- -CCGGgg--UCCCGg--CGGCGCCa--CgCGUC- -5'
5911 5' -67.1 NC_001806.1 + 15848 0.68 0.315785
Target:  5'- gGGCCCCuuuuGGGGCCGCgGgGG-GC-CGa -3'
miRNA:   3'- -CCGGGG----UCCCGGCGgCgCCaCGcGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.