Results 101 - 120 of 189 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5911 | 5' | -67.1 | NC_001806.1 | + | 24355 | 0.68 | 0.318481 |
Target: 5'- cGGCCCgGGGGUCuucgcgcgcguggagGCCGCGcacGCGCGc -3' miRNA: 3'- -CCGGGgUCCCGG---------------CGGCGCca-CGCGUc -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 83798 | 0.68 | 0.322558 |
Target: 5'- uGGCCuCCGGGGgCGaggaggggGCGGggucgGCGCGGg -3' miRNA: 3'- -CCGG-GGUCCCgGCgg------CGCCa----CGCGUC- -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 4738 | 0.68 | 0.322558 |
Target: 5'- cGGCCCCgggccGGGGCCcgGUCGCcGGcgGCGuCGGc -3' miRNA: 3'- -CCGGGG-----UCCCGG--CGGCG-CCa-CGC-GUC- -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 130432 | 0.68 | 0.325298 |
Target: 5'- cGCCCuCAGGGCCcaGCgcgaucuacgggagcUGCGGUGC-CGGg -3' miRNA: 3'- cCGGG-GUCCCGG--CG---------------GCGCCACGcGUC- -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 132746 | 0.68 | 0.327364 |
Target: 5'- uGGCCUCGGcGGCagccggaugccuccUGcCCGCGGUGCGgGa -3' miRNA: 3'- -CCGGGGUC-CCG--------------GC-GGCGCCACGCgUc -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 57041 | 0.68 | 0.32944 |
Target: 5'- cGGgCCCGGGGCCGgggcCCcCGGcUGCGUg- -3' miRNA: 3'- -CCgGGGUCCCGGC----GGcGCC-ACGCGuc -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 46106 | 0.68 | 0.32944 |
Target: 5'- cGG-CCCGGGGCCuG-CGCGG-GCGCc- -3' miRNA: 3'- -CCgGGGUCCCGG-CgGCGCCaCGCGuc -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 27237 | 0.68 | 0.32944 |
Target: 5'- cGCCCuCAcagggcGGGCCGCCuCGG-GgGCGGg -3' miRNA: 3'- cCGGG-GU------CCCGGCGGcGCCaCgCGUC- -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 4822 | 0.68 | 0.32944 |
Target: 5'- gGGgUCCGGGGCggcgagGCCGCGGggucggGCGuCGGg -3' miRNA: 3'- -CCgGGGUCCCGg-----CGGCGCCa-----CGC-GUC- -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 147705 | 0.68 | 0.332222 |
Target: 5'- nGGCCCCGGaGGCggcgcucgcaCGCacggggccacggccgCGCGGgggcGCGCGGg -3' miRNA: 3'- -CCGGGGUC-CCG----------GCG---------------GCGCCa---CGCGUC- -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 67355 | 0.68 | 0.335725 |
Target: 5'- aGCCgaUCAGGGCCGCCcccccgcGCauGGUGCcccGCAGg -3' miRNA: 3'- cCGG--GGUCCCGGCGG-------CG--CCACG---CGUC- -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 34418 | 0.68 | 0.336429 |
Target: 5'- gGGCCgggCC-GGGCCggGCCG-GGUGgGCGGg -3' miRNA: 3'- -CCGG---GGuCCCGG--CGGCgCCACgCGUC- -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 24218 | 0.68 | 0.336429 |
Target: 5'- uGGCCCgCcgacGGGC--CCGCGGUGuCGCGGc -3' miRNA: 3'- -CCGGG-Gu---CCCGgcGGCGCCAC-GCGUC- -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 81468 | 0.68 | 0.336429 |
Target: 5'- cGGCCCCuuGGGuGCC-CUGgGG-GUGCGGg -3' miRNA: 3'- -CCGGGG--UCC-CGGcGGCgCCaCGCGUC- -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 33341 | 0.68 | 0.336429 |
Target: 5'- cGCCCCuuGGCCGCCcCGGc-UGCAGg -3' miRNA: 3'- cCGGGGucCCGGCGGcGCCacGCGUC- -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 4062 | 0.68 | 0.336429 |
Target: 5'- gGGCgCCCAcacGGCCGCCG-GG-GCGCc- -3' miRNA: 3'- -CCG-GGGUc--CCGGCGGCgCCaCGCGuc -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 37926 | 0.68 | 0.336429 |
Target: 5'- gGGCgCCGGGGCCGuCCGUccaccccgccccGGgGCGgGGu -3' miRNA: 3'- -CCGgGGUCCCGGC-GGCG------------CCaCGCgUC- -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 147207 | 0.67 | 0.342811 |
Target: 5'- cGGCCCCGGcggcggaagaggcGGCCcCCGCGG-GgGuCGGg -3' miRNA: 3'- -CCGGGGUC-------------CCGGcGGCGCCaCgC-GUC- -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 1854 | 0.67 | 0.343525 |
Target: 5'- cGCgUCGGGGUacaGgCGCGcGUGCGCGGc -3' miRNA: 3'- cCGgGGUCCCGg--CgGCGC-CACGCGUC- -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 33114 | 0.67 | 0.343525 |
Target: 5'- gGGUCCggaCGGGGCCcggaccGCCGCGGU-CGgGGg -3' miRNA: 3'- -CCGGG---GUCCCGG------CGGCGCCAcGCgUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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