miRNA display CGI


Results 61 - 80 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5911 5' -67.1 NC_001806.1 + 24796 0.72 0.17195
Target:  5'- cGGCCCgGGGGCCcuGCCGCcg-GCGCc- -3'
miRNA:   3'- -CCGGGgUCCCGG--CGGCGccaCGCGuc -5'
5911 5' -67.1 NC_001806.1 + 24837 0.67 0.388335
Target:  5'- gGGCCUCGgccacGGGCCGCaGCGGcaccGUGCuGg -3'
miRNA:   3'- -CCGGGGU-----CCCGGCGgCGCCa---CGCGuC- -5'
5911 5' -67.1 NC_001806.1 + 25415 0.71 0.21193
Target:  5'- gGGCga-GGGGCgGUgGUGGUGCGCGGg -3'
miRNA:   3'- -CCGgggUCCCGgCGgCGCCACGCGUC- -5'
5911 5' -67.1 NC_001806.1 + 25863 0.67 0.35804
Target:  5'- uGGCagCCC-GGGCCccCCGCGG-GCGCGc -3'
miRNA:   3'- -CCG--GGGuCCCGGc-GGCGCCaCGCGUc -5'
5911 5' -67.1 NC_001806.1 + 25942 0.66 0.412134
Target:  5'- gGGCgUgGGGGCgggGCCGCGGgaGCGgGGg -3'
miRNA:   3'- -CCGgGgUCCCGg--CGGCGCCa-CGCgUC- -5'
5911 5' -67.1 NC_001806.1 + 26411 0.66 0.428492
Target:  5'- cGCCCCc-GGCCGCC-CGGgcccacggGCGCc- -3'
miRNA:   3'- cCGGGGucCCGGCGGcGCCa-------CGCGuc -5'
5911 5' -67.1 NC_001806.1 + 26951 0.67 0.388335
Target:  5'- gGGCCUCGGccgcccgccuGGCgCGCCGCGGcuCGUGGg -3'
miRNA:   3'- -CCGGGGUC----------CCG-GCGGCGCCacGCGUC- -5'
5911 5' -67.1 NC_001806.1 + 27237 0.68 0.32944
Target:  5'- cGCCCuCAcagggcGGGCCGCCuCGG-GgGCGGg -3'
miRNA:   3'- cCGGG-GU------CCCGGCGGcGCCaCgCGUC- -5'
5911 5' -67.1 NC_001806.1 + 27842 0.75 0.106094
Target:  5'- uGGUCCCcggggacGGGGCCGCCccGCGGUGgGCc- -3'
miRNA:   3'- -CCGGGG-------UCCCGGCGG--CGCCACgCGuc -5'
5911 5' -67.1 NC_001806.1 + 28154 0.69 0.296111
Target:  5'- cGGCCUgAGGGCCGCCcCca-GCGCGa -3'
miRNA:   3'- -CCGGGgUCCCGGCGGcGccaCGCGUc -5'
5911 5' -67.1 NC_001806.1 + 28526 0.69 0.289768
Target:  5'- aGGgCCCGGGGUCGCCGUGGg------ -3'
miRNA:   3'- -CCgGGGUCCCGGCGGCGCCacgcguc -5'
5911 5' -67.1 NC_001806.1 + 28593 0.66 0.396167
Target:  5'- aGGa-CCGGGGUCGCCGUguuGGggGCGUGGu -3'
miRNA:   3'- -CCggGGUCCCGGCGGCG---CCa-CGCGUC- -5'
5911 5' -67.1 NC_001806.1 + 29785 0.67 0.388335
Target:  5'- cGCCCCcccacgcagAGGcGCCGCCGCGccccccGUGacggGCGGg -3'
miRNA:   3'- cCGGGG---------UCC-CGGCGGCGC------CACg---CGUC- -5'
5911 5' -67.1 NC_001806.1 + 30178 0.67 0.380605
Target:  5'- cGCCCC-GGGCCccccgcguCCGCGGccGCGuCGGg -3'
miRNA:   3'- cCGGGGuCCCGGc-------GGCGCCa-CGC-GUC- -5'
5911 5' -67.1 NC_001806.1 + 30284 0.69 0.261963
Target:  5'- cGGcCCCCGGGGCgGagccggccgcccgccCCGCGGacGCGCGc -3'
miRNA:   3'- -CC-GGGGUCCCGgC---------------GGCGCCa-CGCGUc -5'
5911 5' -67.1 NC_001806.1 + 32988 0.72 0.180208
Target:  5'- gGGCCCCGggccGGGCCGCCaCGGggGC-CGGc -3'
miRNA:   3'- -CCGGGGU----CCCGGCGGcGCCa-CGcGUC- -5'
5911 5' -67.1 NC_001806.1 + 33114 0.67 0.343525
Target:  5'- gGGUCCggaCGGGGCCcggaccGCCGCGGU-CGgGGg -3'
miRNA:   3'- -CCGGG---GUCCCGG------CGGCGCCAcGCgUC- -5'
5911 5' -67.1 NC_001806.1 + 33147 0.66 0.420265
Target:  5'- nGGCCCCucgucccGGGCCGUaCGCGGccuuCGCc- -3'
miRNA:   3'- -CCGGGGu------CCCGGCG-GCGCCac--GCGuc -5'
5911 5' -67.1 NC_001806.1 + 33341 0.68 0.336429
Target:  5'- cGCCCCuuGGCCGCCcCGGc-UGCAGg -3'
miRNA:   3'- cCGGGGucCCGGCGGcGCCacGCGUC- -5'
5911 5' -67.1 NC_001806.1 + 33980 0.71 0.188816
Target:  5'- cGGgCCgGGGGUCGCCGgGGcagGgGCGGg -3'
miRNA:   3'- -CCgGGgUCCCGGCGGCgCCa--CgCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.