Results 81 - 100 of 189 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5911 | 5' | -67.1 | NC_001806.1 | + | 34282 | 0.66 | 0.435977 |
Target: 5'- gGGUCCCGGGGgCgggaugggguuuaGCgGCGGggggcgGCGCGc -3' miRNA: 3'- -CCGGGGUCCCgG-------------CGgCGCCa-----CGCGUc -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 34418 | 0.68 | 0.336429 |
Target: 5'- gGGCCgggCC-GGGCCggGCCG-GGUGgGCGGg -3' miRNA: 3'- -CCGG---GGuCCCGG--CGGCgCCACgCGUC- -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 37359 | 0.66 | 0.412134 |
Target: 5'- gGGUCCUGGGGgCGCaGCGGcagguUGUGguGg -3' miRNA: 3'- -CCGGGGUCCCgGCGgCGCC-----ACGCguC- -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 37782 | 0.74 | 0.12609 |
Target: 5'- cGCUCCGGGGCCGgggcgcggggguCCGCGG-GCGgGGg -3' miRNA: 3'- cCGGGGUCCCGGC------------GGCGCCaCGCgUC- -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 37926 | 0.68 | 0.336429 |
Target: 5'- gGGCgCCGGGGCCGuCCGUccaccccgccccGGgGCGgGGu -3' miRNA: 3'- -CCGgGGUCCCGGC-GGCG------------CCaCGCgUC- -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 39182 | 0.66 | 0.420265 |
Target: 5'- cGCCCCGGGGCgGCgGCcuugucUGCGUu- -3' miRNA: 3'- cCGGGGUCCCGgCGgCGcc----ACGCGuc -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 41844 | 0.7 | 0.232137 |
Target: 5'- gGGCCCC-GGGCgCGUacgUGCGaGcGCGCAGg -3' miRNA: 3'- -CCGGGGuCCCG-GCG---GCGC-CaCGCGUC- -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 42233 | 0.7 | 0.248338 |
Target: 5'- cGGCCgCCGcGGCC-CCGCGG-GCGUAc -3' miRNA: 3'- -CCGG-GGUcCCGGcGGCGCCaCGCGUc -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 43287 | 0.66 | 0.420265 |
Target: 5'- cGCCCuCGGaGGCggaGCCGCGGc-UGCAGg -3' miRNA: 3'- cCGGG-GUC-CCGg--CGGCGCCacGCGUC- -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 43485 | 0.69 | 0.286014 |
Target: 5'- aGGCCCCcacgaucgacGGGGCCGUgGCGGcccaucaggacaagaUGCgGCGc -3' miRNA: 3'- -CCGGGG----------UCCCGGCGgCGCC---------------ACG-CGUc -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 44734 | 0.69 | 0.289768 |
Target: 5'- cGGCCCCgguuggagggGGGGgCGCCaguuGCGGgaacUGcCGCAGg -3' miRNA: 3'- -CCGGGG----------UCCCgGCGG----CGCC----AC-GCGUC- -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 45298 | 0.67 | 0.35804 |
Target: 5'- gGGCCCgCgcgGGGaGCCGCCcggcgaggaggGCGG-GCGCGa -3' miRNA: 3'- -CCGGG-G---UCC-CGGCGG-----------CGCCaCGCGUc -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 46106 | 0.68 | 0.32944 |
Target: 5'- cGG-CCCGGGGCCuG-CGCGG-GCGCc- -3' miRNA: 3'- -CCgGGGUCCCGG-CgGCGCCaCGCGuc -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 49367 | 0.73 | 0.15168 |
Target: 5'- cGCCCC-GGGCCcgaugcggcccguaGCCaGuCGGUGCGCGGu -3' miRNA: 3'- cCGGGGuCCCGG--------------CGG-C-GCCACGCGUC- -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 49689 | 0.67 | 0.343525 |
Target: 5'- uGGCCCCucaGGuuGCCGUGugggacgaguccGUGCGCu- -3' miRNA: 3'- -CCGGGGuc-CCggCGGCGC------------CACGCGuc -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 50089 | 0.67 | 0.350729 |
Target: 5'- cGUCCCgucGGGGCCGCgGCcGUgccguuacugaGCGCGGg -3' miRNA: 3'- cCGGGG---UCCCGGCGgCGcCA-----------CGCGUC- -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 50151 | 0.71 | 0.193254 |
Target: 5'- cGGCCCCGa---CGCCGCGGUGUuccGCAGc -3' miRNA: 3'- -CCGGGGUcccgGCGGCGCCACG---CGUC- -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 50489 | 0.66 | 0.412134 |
Target: 5'- uGCCCCuGGGaaGCCccGCGGU-CGUGGg -3' miRNA: 3'- cCGGGGuCCCggCGG--CGCCAcGCGUC- -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 52447 | 0.66 | 0.420265 |
Target: 5'- aGGCUugguUCGGGGCCGCCcUGGc-CGCGGa -3' miRNA: 3'- -CCGG----GGUCCCGGCGGcGCCacGCGUC- -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 52710 | 0.7 | 0.226938 |
Target: 5'- aGGUUCCGGaGG-CGCCGCGcGgacgGCGCGGg -3' miRNA: 3'- -CCGGGGUC-CCgGCGGCGC-Ca---CGCGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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