Results 101 - 120 of 189 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5911 | 5' | -67.1 | NC_001806.1 | + | 54785 | 0.71 | 0.21193 |
Target: 5'- cGGCagcaCCAGGGCCaGCC-CGGUG-GCAu -3' miRNA: 3'- -CCGg---GGUCCCGG-CGGcGCCACgCGUc -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 55494 | 0.69 | 0.296111 |
Target: 5'- gGGCCaauGGGUCGCgGCGGU-CGCAc -3' miRNA: 3'- -CCGGgguCCCGGCGgCGCCAcGCGUc -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 56823 | 0.7 | 0.221838 |
Target: 5'- cGCCCCcGGGCCcgccaacaccGCCGCGGccaGgGCGGc -3' miRNA: 3'- cCGGGGuCCCGG----------CGGCGCCa--CgCGUC- -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 57041 | 0.68 | 0.32944 |
Target: 5'- cGGgCCCGGGGCCGgggcCCcCGGcUGCGUg- -3' miRNA: 3'- -CCgGGGUCCCGGC----GGcGCC-ACGCGuc -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 60477 | 0.66 | 0.396167 |
Target: 5'- aGGCCCCcucugccgccGGCCGCCGgCGGcaccgagacGCGCGu -3' miRNA: 3'- -CCGGGGuc--------CCGGCGGC-GCCa--------CGCGUc -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 63960 | 0.7 | 0.226938 |
Target: 5'- uGGCCCgCAGGGUCGCCuuguuuGUGGUG-GCc- -3' miRNA: 3'- -CCGGG-GUCCCGGCGG------CGCCACgCGuc -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 64130 | 0.73 | 0.145653 |
Target: 5'- cGCCCCAGGGCgauguggcgcaUGCCGCGcGUGgcccgGCAGg -3' miRNA: 3'- cCGGGGUCCCG-----------GCGGCGC-CACg----CGUC- -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 65462 | 0.66 | 0.396167 |
Target: 5'- cGGCCCCcGGGUC-CUGgGG-GCGCc- -3' miRNA: 3'- -CCGGGGuCCCGGcGGCgCCaCGCGuc -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 65645 | 0.69 | 0.277404 |
Target: 5'- gGGCCCCGGcGGCCuCCcccuggGUGGcUGCGCuGg -3' miRNA: 3'- -CCGGGGUC-CCGGcGG------CGCC-ACGCGuC- -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 66813 | 0.67 | 0.388335 |
Target: 5'- cGGCCgagCGGGGCCGgcCCGgguggcCGGUGUGCGc -3' miRNA: 3'- -CCGGg--GUCCCGGC--GGC------GCCACGCGUc -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 67180 | 0.72 | 0.181901 |
Target: 5'- uGGCCCCAGGccucgcccaGCCGCUcggucugccggccugGCGGgGCGCGc -3' miRNA: 3'- -CCGGGGUCC---------CGGCGG---------------CGCCaCGCGUc -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 67355 | 0.68 | 0.335725 |
Target: 5'- aGCCgaUCAGGGCCGCCcccccgcGCauGGUGCcccGCAGg -3' miRNA: 3'- cCGG--GGUCCCGGCGG-------CG--CCACG---CGUC- -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 67519 | 0.77 | 0.081918 |
Target: 5'- aGCCCU-GGGCCGUCGCGGcgagagaucgggggGCGCAGg -3' miRNA: 3'- cCGGGGuCCCGGCGGCGCCa-------------CGCGUC- -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 68591 | 0.76 | 0.085018 |
Target: 5'- cGGCCCUGGGGCCGguCCGCGuccgccaGUGCGCc- -3' miRNA: 3'- -CCGGGGUCCCGGC--GGCGC-------CACGCGuc -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 69397 | 0.67 | 0.372978 |
Target: 5'- cGGCCCUggaGGGGUUucugGCgGCGGgcguccccGCGCGGa -3' miRNA: 3'- -CCGGGG---UCCCGG----CGgCGCCa-------CGCGUC- -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 70330 | 0.69 | 0.259651 |
Target: 5'- cGCCCU--GGCCGCCcggGgGGUGCuGCAGg -3' miRNA: 3'- cCGGGGucCCGGCGG---CgCCACG-CGUC- -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 71035 | 0.66 | 0.420265 |
Target: 5'- aGCCCCGcGGCCGaCCGCGucGUGCu- -3' miRNA: 3'- cCGGGGUcCCGGC-GGCGCcaCGCGuc -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 71103 | 0.66 | 0.4041 |
Target: 5'- cGGCCCCcuGGGCCagacgaCCGCGGUuC-CGGa -3' miRNA: 3'- -CCGGGGu-CCCGGc-----GGCGCCAcGcGUC- -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 71961 | 0.73 | 0.145653 |
Target: 5'- gGGCCCU-GGGCCGCCGCGcaUGUGUu- -3' miRNA: 3'- -CCGGGGuCCCGGCGGCGCc-ACGCGuc -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 72014 | 0.66 | 0.396167 |
Target: 5'- aGuaCCCAgGGGCgCGCgGCGGacUGCGCu- -3' miRNA: 3'- -CcgGGGU-CCCG-GCGgCGCC--ACGCGuc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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