miRNA display CGI


Results 41 - 60 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5911 5' -67.1 NC_001806.1 + 99931 0.67 0.372978
Target:  5'- uGGUCCCGggagaauggcGGGCCGCgCGCcGGgagucgaccccGCGCGGc -3'
miRNA:   3'- -CCGGGGU----------CCCGGCG-GCG-CCa----------CGCGUC- -5'
5911 5' -67.1 NC_001806.1 + 98024 0.71 0.21193
Target:  5'- cGGCCaCCGuGGGCCGgCG-GGUgagcGCGCGGa -3'
miRNA:   3'- -CCGG-GGU-CCCGGCgGCgCCA----CGCGUC- -5'
5911 5' -67.1 NC_001806.1 + 93918 0.68 0.302561
Target:  5'- gGGaCCCCGGGGCucagccagaCGCCG-GGUaGCGUAc -3'
miRNA:   3'- -CC-GGGGUCCCG---------GCGGCgCCA-CGCGUc -5'
5911 5' -67.1 NC_001806.1 + 92932 0.69 0.279842
Target:  5'- gGGCCuggaggCCGGGGCCcgcgcgcugauggacGCCGUGGacGCGCAu -3'
miRNA:   3'- -CCGG------GGUCCCGG---------------CGGCGCCa-CGCGUc -5'
5911 5' -67.1 NC_001806.1 + 92886 0.67 0.35804
Target:  5'- -cCCCCAGcgugcaggcugcGGCCG-CGUGGUccGCGCAGg -3'
miRNA:   3'- ccGGGGUC------------CCGGCgGCGCCA--CGCGUC- -5'
5911 5' -67.1 NC_001806.1 + 89270 0.68 0.302561
Target:  5'- uGGCUCCgcgAGGGCCG--GCGG-GCGCAa -3'
miRNA:   3'- -CCGGGG---UCCCGGCggCGCCaCGCGUc -5'
5911 5' -67.1 NC_001806.1 + 88654 0.67 0.372978
Target:  5'- cGCgCCCGGGGaCUcgcgcaggGCCGCGGccaUGCGCu- -3'
miRNA:   3'- cCG-GGGUCCC-GG--------CGGCGCC---ACGCGuc -5'
5911 5' -67.1 NC_001806.1 + 88365 0.71 0.21193
Target:  5'- aGGCCaUCGGGGCCGCCGgcUGGgcuaGCGUg- -3'
miRNA:   3'- -CCGG-GGUCCCGGCGGC--GCCa---CGCGuc -5'
5911 5' -67.1 NC_001806.1 + 88145 0.66 0.4041
Target:  5'- uGCUCCAGGGCgGUgGUGGacagGuCGUAGa -3'
miRNA:   3'- cCGGGGUCCCGgCGgCGCCa---C-GCGUC- -5'
5911 5' -67.1 NC_001806.1 + 88073 0.67 0.369957
Target:  5'- aGGCCCCu-GGCCGCCaGCucguucaGGUGggauucggggagguCGCAGg -3'
miRNA:   3'- -CCGGGGucCCGGCGG-CG-------CCAC--------------GCGUC- -5'
5911 5' -67.1 NC_001806.1 + 86443 0.66 0.428492
Target:  5'- aGGUCgaCCAGGGCCcuggaGgUGCGGUugauaaacGCGCAGu -3'
miRNA:   3'- -CCGG--GGUCCCGG-----CgGCGCCA--------CGCGUC- -5'
5911 5' -67.1 NC_001806.1 + 86024 0.68 0.315785
Target:  5'- uGGCCggggAGGGCaggGCCGCGGgggGgGCGGg -3'
miRNA:   3'- -CCGGgg--UCCCGg--CGGCGCCa--CgCGUC- -5'
5911 5' -67.1 NC_001806.1 + 84078 0.7 0.237436
Target:  5'- gGGCCCCAGcugcgcGCUGCCGCGGaggcccgucGCGCc- -3'
miRNA:   3'- -CCGGGGUCc-----CGGCGGCGCCa--------CGCGuc -5'
5911 5' -67.1 NC_001806.1 + 83798 0.68 0.322558
Target:  5'- uGGCCuCCGGGGgCGaggaggggGCGGggucgGCGCGGg -3'
miRNA:   3'- -CCGG-GGUCCCgGCgg------CGCCa----CGCGUC- -5'
5911 5' -67.1 NC_001806.1 + 83719 0.69 0.259651
Target:  5'- -uCCCCGGGaGCCGCCaaGGUGCaGUAc -3'
miRNA:   3'- ccGGGGUCC-CGGCGGcgCCACG-CGUc -5'
5911 5' -67.1 NC_001806.1 + 83241 0.66 0.4041
Target:  5'- cGCCCCcucaAGGGC--CCGCGGggGgGCGGg -3'
miRNA:   3'- cCGGGG----UCCCGgcGGCGCCa-CgCGUC- -5'
5911 5' -67.1 NC_001806.1 + 83030 0.74 0.120128
Target:  5'- -cCCCCGGGGUccuggcgagCGUCGCGGUGUGCGa -3'
miRNA:   3'- ccGGGGUCCCG---------GCGGCGCCACGCGUc -5'
5911 5' -67.1 NC_001806.1 + 81935 0.68 0.309119
Target:  5'- cGGCCCCGuacgccucccGGGaCCGCCGgguuCGGcgGCGaCGGg -3'
miRNA:   3'- -CCGGGGU----------CCC-GGCGGC----GCCa-CGC-GUC- -5'
5911 5' -67.1 NC_001806.1 + 81759 0.66 0.420265
Target:  5'- cGGcCCCCAGGacgagucCCGCCGCcaaaacgaGCGCGGg -3'
miRNA:   3'- -CC-GGGGUCCc------GGCGGCGcca-----CGCGUC- -5'
5911 5' -67.1 NC_001806.1 + 81468 0.68 0.336429
Target:  5'- cGGCCCCuuGGGuGCC-CUGgGG-GUGCGGg -3'
miRNA:   3'- -CCGGGG--UCC-CGGcGGCgCCaCGCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.