miRNA display CGI


Results 61 - 80 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5911 5' -67.1 NC_001806.1 + 79552 0.66 0.445228
Target:  5'- cGCCCguGGGCCcCCGCGacgacuuccgGCGCu- -3'
miRNA:   3'- cCGGGguCCCGGcGGCGCca--------CGCGuc -5'
5911 5' -67.1 NC_001806.1 + 78927 0.71 0.197783
Target:  5'- cGGCCCCucgcccGGGGcCCGCCGUgucuGGUGCucGUGGa -3'
miRNA:   3'- -CCGGGG------UCCC-GGCGGCG----CCACG--CGUC- -5'
5911 5' -67.1 NC_001806.1 + 78231 0.66 0.411326
Target:  5'- aGGCCCUccgacccGGGGCCucauguucgGCaCGCGGcUG-GCAGa -3'
miRNA:   3'- -CCGGGG-------UCCCGG---------CG-GCGCC-ACgCGUC- -5'
5911 5' -67.1 NC_001806.1 + 77966 0.78 0.06165
Target:  5'- cGGCCCCGGGGCCGCCGCucGGacCcCAGa -3'
miRNA:   3'- -CCGGGGUCCCGGCGGCG--CCacGcGUC- -5'
5911 5' -67.1 NC_001806.1 + 77289 0.72 0.180208
Target:  5'- uGGCCCCAuGGGCgGuggaggaguuCCGgGGcGCGCGGg -3'
miRNA:   3'- -CCGGGGU-CCCGgC----------GGCgCCaCGCGUC- -5'
5911 5' -67.1 NC_001806.1 + 76486 0.71 0.188816
Target:  5'- uGGCCgauaCCAaGGaCGCCGUGGUGCGCGc -3'
miRNA:   3'- -CCGG----GGUcCCgGCGGCGCCACGCGUc -5'
5911 5' -67.1 NC_001806.1 + 76285 0.67 0.388335
Target:  5'- uGGCCgCC---GCCGCggaggagauaucCGCGGUGCGCAa -3'
miRNA:   3'- -CCGG-GGuccCGGCG------------GCGCCACGCGUc -5'
5911 5' -67.1 NC_001806.1 + 76235 0.7 0.221838
Target:  5'- cGCCCUccGGGCCGaCgCGCGGcGCGCGa -3'
miRNA:   3'- cCGGGGu-CCCGGC-G-GCGCCaCGCGUc -5'
5911 5' -67.1 NC_001806.1 + 73303 0.71 0.202405
Target:  5'- uGGCCCgCGaGGUCGCCGCGuGUuCGCGGc -3'
miRNA:   3'- -CCGGG-GUcCCGGCGGCGC-CAcGCGUC- -5'
5911 5' -67.1 NC_001806.1 + 72014 0.66 0.396167
Target:  5'- aGuaCCCAgGGGCgCGCgGCGGacUGCGCu- -3'
miRNA:   3'- -CcgGGGU-CCCG-GCGgCGCC--ACGCGuc -5'
5911 5' -67.1 NC_001806.1 + 71961 0.73 0.145653
Target:  5'- gGGCCCU-GGGCCGCCGCGcaUGUGUu- -3'
miRNA:   3'- -CCGGGGuCCCGGCGGCGCc-ACGCGuc -5'
5911 5' -67.1 NC_001806.1 + 71103 0.66 0.4041
Target:  5'- cGGCCCCcuGGGCCagacgaCCGCGGUuC-CGGa -3'
miRNA:   3'- -CCGGGGu-CCCGGc-----GGCGCCAcGcGUC- -5'
5911 5' -67.1 NC_001806.1 + 71035 0.66 0.420265
Target:  5'- aGCCCCGcGGCCGaCCGCGucGUGCu- -3'
miRNA:   3'- cCGGGGUcCCGGC-GGCGCcaCGCGuc -5'
5911 5' -67.1 NC_001806.1 + 70330 0.69 0.259651
Target:  5'- cGCCCU--GGCCGCCcggGgGGUGCuGCAGg -3'
miRNA:   3'- cCGGGGucCCGGCGG---CgCCACG-CGUC- -5'
5911 5' -67.1 NC_001806.1 + 69397 0.67 0.372978
Target:  5'- cGGCCCUggaGGGGUUucugGCgGCGGgcguccccGCGCGGa -3'
miRNA:   3'- -CCGGGG---UCCCGG----CGgCGCCa-------CGCGUC- -5'
5911 5' -67.1 NC_001806.1 + 68591 0.76 0.085018
Target:  5'- cGGCCCUGGGGCCGguCCGCGuccgccaGUGCGCc- -3'
miRNA:   3'- -CCGGGGUCCCGGC--GGCGC-------CACGCGuc -5'
5911 5' -67.1 NC_001806.1 + 67519 0.77 0.081918
Target:  5'- aGCCCU-GGGCCGUCGCGGcgagagaucgggggGCGCAGg -3'
miRNA:   3'- cCGGGGuCCCGGCGGCGCCa-------------CGCGUC- -5'
5911 5' -67.1 NC_001806.1 + 67355 0.68 0.335725
Target:  5'- aGCCgaUCAGGGCCGCCcccccgcGCauGGUGCcccGCAGg -3'
miRNA:   3'- cCGG--GGUCCCGGCGG-------CG--CCACG---CGUC- -5'
5911 5' -67.1 NC_001806.1 + 67180 0.72 0.181901
Target:  5'- uGGCCCCAGGccucgcccaGCCGCUcggucugccggccugGCGGgGCGCGc -3'
miRNA:   3'- -CCGGGGUCC---------CGGCGG---------------CGCCaCGCGUc -5'
5911 5' -67.1 NC_001806.1 + 66813 0.67 0.388335
Target:  5'- cGGCCgagCGGGGCCGgcCCGgguggcCGGUGUGCGc -3'
miRNA:   3'- -CCGGg--GUCCCGGC--GGC------GCCACGCGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.