miRNA display CGI


Results 81 - 100 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5911 5' -67.1 NC_001806.1 + 65645 0.69 0.277404
Target:  5'- gGGCCCCGGcGGCCuCCcccuggGUGGcUGCGCuGg -3'
miRNA:   3'- -CCGGGGUC-CCGGcGG------CGCC-ACGCGuC- -5'
5911 5' -67.1 NC_001806.1 + 65462 0.66 0.396167
Target:  5'- cGGCCCCcGGGUC-CUGgGG-GCGCc- -3'
miRNA:   3'- -CCGGGGuCCCGGcGGCgCCaCGCGuc -5'
5911 5' -67.1 NC_001806.1 + 64130 0.73 0.145653
Target:  5'- cGCCCCAGGGCgauguggcgcaUGCCGCGcGUGgcccgGCAGg -3'
miRNA:   3'- cCGGGGUCCCG-----------GCGGCGC-CACg----CGUC- -5'
5911 5' -67.1 NC_001806.1 + 63960 0.7 0.226938
Target:  5'- uGGCCCgCAGGGUCGCCuuguuuGUGGUG-GCc- -3'
miRNA:   3'- -CCGGG-GUCCCGGCGG------CGCCACgCGuc -5'
5911 5' -67.1 NC_001806.1 + 60477 0.66 0.396167
Target:  5'- aGGCCCCcucugccgccGGCCGCCGgCGGcaccgagacGCGCGu -3'
miRNA:   3'- -CCGGGGuc--------CCGGCGGC-GCCa--------CGCGUc -5'
5911 5' -67.1 NC_001806.1 + 57041 0.68 0.32944
Target:  5'- cGGgCCCGGGGCCGgggcCCcCGGcUGCGUg- -3'
miRNA:   3'- -CCgGGGUCCCGGC----GGcGCC-ACGCGuc -5'
5911 5' -67.1 NC_001806.1 + 56823 0.7 0.221838
Target:  5'- cGCCCCcGGGCCcgccaacaccGCCGCGGccaGgGCGGc -3'
miRNA:   3'- cCGGGGuCCCGG----------CGGCGCCa--CgCGUC- -5'
5911 5' -67.1 NC_001806.1 + 55494 0.69 0.296111
Target:  5'- gGGCCaauGGGUCGCgGCGGU-CGCAc -3'
miRNA:   3'- -CCGGgguCCCGGCGgCGCCAcGCGUc -5'
5911 5' -67.1 NC_001806.1 + 54785 0.71 0.21193
Target:  5'- cGGCagcaCCAGGGCCaGCC-CGGUG-GCAu -3'
miRNA:   3'- -CCGg---GGUCCCGG-CGGcGCCACgCGUc -5'
5911 5' -67.1 NC_001806.1 + 52710 0.7 0.226938
Target:  5'- aGGUUCCGGaGG-CGCCGCGcGgacgGCGCGGg -3'
miRNA:   3'- -CCGGGGUC-CCgGCGGCGC-Ca---CGCGUC- -5'
5911 5' -67.1 NC_001806.1 + 52447 0.66 0.420265
Target:  5'- aGGCUugguUCGGGGCCGCCcUGGc-CGCGGa -3'
miRNA:   3'- -CCGG----GGUCCCGGCGGcGCCacGCGUC- -5'
5911 5' -67.1 NC_001806.1 + 50489 0.66 0.412134
Target:  5'- uGCCCCuGGGaaGCCccGCGGU-CGUGGg -3'
miRNA:   3'- cCGGGGuCCCggCGG--CGCCAcGCGUC- -5'
5911 5' -67.1 NC_001806.1 + 50151 0.71 0.193254
Target:  5'- cGGCCCCGa---CGCCGCGGUGUuccGCAGc -3'
miRNA:   3'- -CCGGGGUcccgGCGGCGCCACG---CGUC- -5'
5911 5' -67.1 NC_001806.1 + 50089 0.67 0.350729
Target:  5'- cGUCCCgucGGGGCCGCgGCcGUgccguuacugaGCGCGGg -3'
miRNA:   3'- cCGGGG---UCCCGGCGgCGcCA-----------CGCGUC- -5'
5911 5' -67.1 NC_001806.1 + 49689 0.67 0.343525
Target:  5'- uGGCCCCucaGGuuGCCGUGugggacgaguccGUGCGCu- -3'
miRNA:   3'- -CCGGGGuc-CCggCGGCGC------------CACGCGuc -5'
5911 5' -67.1 NC_001806.1 + 49367 0.73 0.15168
Target:  5'- cGCCCC-GGGCCcgaugcggcccguaGCCaGuCGGUGCGCGGu -3'
miRNA:   3'- cCGGGGuCCCGG--------------CGG-C-GCCACGCGUC- -5'
5911 5' -67.1 NC_001806.1 + 46106 0.68 0.32944
Target:  5'- cGG-CCCGGGGCCuG-CGCGG-GCGCc- -3'
miRNA:   3'- -CCgGGGUCCCGG-CgGCGCCaCGCGuc -5'
5911 5' -67.1 NC_001806.1 + 45298 0.67 0.35804
Target:  5'- gGGCCCgCgcgGGGaGCCGCCcggcgaggaggGCGG-GCGCGa -3'
miRNA:   3'- -CCGGG-G---UCC-CGGCGG-----------CGCCaCGCGUc -5'
5911 5' -67.1 NC_001806.1 + 44734 0.69 0.289768
Target:  5'- cGGCCCCgguuggagggGGGGgCGCCaguuGCGGgaacUGcCGCAGg -3'
miRNA:   3'- -CCGGGG----------UCCCgGCGG----CGCC----AC-GCGUC- -5'
5911 5' -67.1 NC_001806.1 + 43485 0.69 0.286014
Target:  5'- aGGCCCCcacgaucgacGGGGCCGUgGCGGcccaucaggacaagaUGCgGCGc -3'
miRNA:   3'- -CCGGGG----------UCCCGGCGgCGCC---------------ACG-CGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.