Results 101 - 120 of 189 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5911 | 5' | -67.1 | NC_001806.1 | + | 22122 | 0.67 | 0.372978 |
Target: 5'- gGGCCUCugGGGGgCGCCcgagGCGGaggagGCGCGa -3' miRNA: 3'- -CCGGGG--UCCCgGCGG----CGCCa----CGCGUc -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 88073 | 0.67 | 0.369957 |
Target: 5'- aGGCCCCu-GGCCGCCaGCucguucaGGUGggauucggggagguCGCAGg -3' miRNA: 3'- -CCGGGGucCCGGCGG-CG-------CCAC--------------GCGUC- -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 3183 | 0.67 | 0.365456 |
Target: 5'- cGGCCaCGGcGGCCucgcuGCCGcCGGccacGCGCAGg -3' miRNA: 3'- -CCGGgGUC-CCGG-----CGGC-GCCa---CGCGUC- -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 147759 | 0.67 | 0.365456 |
Target: 5'- nGGUCCCGacGCgGCCGCGGa-CGCGGg -3' miRNA: 3'- -CCGGGGUccCGgCGGCGCCacGCGUC- -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 3326 | 0.67 | 0.365456 |
Target: 5'- gGGCCCgCGGGuCCcuccgGCCGCGGgggGCugGCGGg -3' miRNA: 3'- -CCGGG-GUCCcGG-----CGGCGCCa--CG--CGUC- -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 24837 | 0.67 | 0.388335 |
Target: 5'- gGGCCUCGgccacGGGCCGCaGCGGcaccGUGCuGg -3' miRNA: 3'- -CCGGGGU-----CCCGGCGgCGCCa---CGCGuC- -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 26951 | 0.67 | 0.388335 |
Target: 5'- gGGCCUCGGccgcccgccuGGCgCGCCGCGGcuCGUGGg -3' miRNA: 3'- -CCGGGGUC----------CCG-GCGGCGCCacGCGUC- -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 151076 | 0.66 | 0.4041 |
Target: 5'- gGGUCgCgGGGGUCGCgGgGGU-CGCGGg -3' miRNA: 3'- -CCGG-GgUCCCGGCGgCgCCAcGCGUC- -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 132681 | 0.66 | 0.4041 |
Target: 5'- cGCUCCugGGGGCCuggcCCGCGGUGgGggcCAGg -3' miRNA: 3'- cCGGGG--UCCCGGc---GGCGCCACgC---GUC- -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 20355 | 0.66 | 0.403303 |
Target: 5'- cGGCCCUuGGGCCGCcCGCcgucccguuGGUcccggcguccggcGgGCGGg -3' miRNA: 3'- -CCGGGGuCCCGGCG-GCG---------CCA-------------CgCGUC- -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 119557 | 0.66 | 0.396167 |
Target: 5'- gGGCgCCaugGGGGCgGCUgacgcagauGCGGUGCugGCGGg -3' miRNA: 3'- -CCGgGG---UCCCGgCGG---------CGCCACG--CGUC- -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 2030 | 0.66 | 0.396167 |
Target: 5'- gGGCCCgucggcGGGCCaGUCGCaGGcGCGCAc -3' miRNA: 3'- -CCGGGgu----CCCGG-CGGCG-CCaCGCGUc -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 72014 | 0.66 | 0.396167 |
Target: 5'- aGuaCCCAgGGGCgCGCgGCGGacUGCGCu- -3' miRNA: 3'- -CcgGGGU-CCCG-GCGgCGCC--ACGCGuc -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 65462 | 0.66 | 0.396167 |
Target: 5'- cGGCCCCcGGGUC-CUGgGG-GCGCc- -3' miRNA: 3'- -CCGGGGuCCCGGcGGCgCCaCGCGuc -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 60477 | 0.66 | 0.396167 |
Target: 5'- aGGCCCCcucugccgccGGCCGCCGgCGGcaccgagacGCGCGu -3' miRNA: 3'- -CCGGGGuc--------CCGGCGGC-GCCa--------CGCGUc -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 28593 | 0.66 | 0.396167 |
Target: 5'- aGGa-CCGGGGUCGCCGUguuGGggGCGUGGu -3' miRNA: 3'- -CCggGGUCCCGGCGGCG---CCa-CGCGUC- -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 100089 | 0.66 | 0.393806 |
Target: 5'- cGGaCCCCAGGGUCucCCGCGGccgGCugaccgcccgccugGCGGu -3' miRNA: 3'- -CC-GGGGUCCCGGc-GGCGCCa--CG--------------CGUC- -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 76285 | 0.67 | 0.388335 |
Target: 5'- uGGCCgCC---GCCGCggaggagauaucCGCGGUGCGCAa -3' miRNA: 3'- -CCGG-GGuccCGGCG------------GCGCCACGCGUc -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 29785 | 0.67 | 0.388335 |
Target: 5'- cGCCCCcccacgcagAGGcGCCGCCGCGccccccGUGacggGCGGg -3' miRNA: 3'- cCGGGG---------UCC-CGGCGGCGC------CACg---CGUC- -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 66813 | 0.67 | 0.388335 |
Target: 5'- cGGCCgagCGGGGCCGgcCCGgguggcCGGUGUGCGc -3' miRNA: 3'- -CCGGg--GUCCCGGC--GGC------GCCACGCGUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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