Results 41 - 60 of 189 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5911 | 5' | -67.1 | NC_001806.1 | + | 1706 | 0.66 | 0.436814 |
Target: 5'- uGGuCCCCGaGGCCGCCGCccGGccguccaGCGCc- -3' miRNA: 3'- -CC-GGGGUcCCGGCGGCG--CCa------CGCGuc -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 79552 | 0.66 | 0.445228 |
Target: 5'- cGCCCguGGGCCcCCGCGacgacuuccgGCGCu- -3' miRNA: 3'- cCGGGguCCCGGcGGCGCca--------CGCGuc -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 143124 | 0.66 | 0.445228 |
Target: 5'- uGGCUgCCGGGaGggGCCGCGGaUGgGCGGg -3' miRNA: 3'- -CCGG-GGUCC-CggCGGCGCC-ACgCGUC- -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 5950 | 0.66 | 0.445228 |
Target: 5'- cGCCCCaagggggcGGGGCCGCCG-GGUaaaagaagugaGaCGCGa -3' miRNA: 3'- cCGGGG--------UCCCGGCGGCgCCA-----------C-GCGUc -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 23254 | 0.66 | 0.445228 |
Target: 5'- cGGCCgCCGccGCCuccgccgcGCCGCGGgagggGCGCAa -3' miRNA: 3'- -CCGG-GGUccCGG--------CGGCGCCa----CGCGUc -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 26411 | 0.66 | 0.428492 |
Target: 5'- cGCCCCc-GGCCGCC-CGGgcccacggGCGCc- -3' miRNA: 3'- cCGGGGucCCGGCGGcGCCa-------CGCGuc -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 305 | 0.66 | 0.428492 |
Target: 5'- cGGCCCCGccccccacGcCCGCCGCGcGcGCGCAc -3' miRNA: 3'- -CCGGGGUcc------C-GGCGGCGC-CaCGCGUc -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 83241 | 0.66 | 0.4041 |
Target: 5'- cGCCCCcucaAGGGC--CCGCGGggGgGCGGg -3' miRNA: 3'- cCGGGG----UCCCGgcGGCGCCa-CgCGUC- -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 120901 | 0.66 | 0.4041 |
Target: 5'- uGCCCCGgccggauucccGGGCCGgagcUCGCGGcacGCGCGa -3' miRNA: 3'- cCGGGGU-----------CCCGGC----GGCGCCa--CGCGUc -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 78231 | 0.66 | 0.411326 |
Target: 5'- aGGCCCUccgacccGGGGCCucauguucgGCaCGCGGcUG-GCAGa -3' miRNA: 3'- -CCGGGG-------UCCCGG---------CG-GCGCC-ACgCGUC- -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 25942 | 0.66 | 0.412134 |
Target: 5'- gGGCgUgGGGGCgggGCCGCGGgaGCGgGGg -3' miRNA: 3'- -CCGgGgUCCCGg--CGGCGCCa-CGCgUC- -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 37359 | 0.66 | 0.412134 |
Target: 5'- gGGUCCUGGGGgCGCaGCGGcagguUGUGguGg -3' miRNA: 3'- -CCGGGGUCCCgGCGgCGCC-----ACGCguC- -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 50489 | 0.66 | 0.412134 |
Target: 5'- uGCCCCuGGGaaGCCccGCGGU-CGUGGg -3' miRNA: 3'- cCGGGGuCCCggCGG--CGCCAcGCGUC- -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 33147 | 0.66 | 0.420265 |
Target: 5'- nGGCCCCucgucccGGGCCGUaCGCGGccuuCGCc- -3' miRNA: 3'- -CCGGGGu------CCCGGCG-GCGCCac--GCGuc -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 52447 | 0.66 | 0.420265 |
Target: 5'- aGGCUugguUCGGGGCCGCCcUGGc-CGCGGa -3' miRNA: 3'- -CCGG----GGUCCCGGCGGcGCCacGCGUC- -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 81759 | 0.66 | 0.420265 |
Target: 5'- cGGcCCCCAGGacgagucCCGCCGCcaaaacgaGCGCGGg -3' miRNA: 3'- -CC-GGGGUCCc------GGCGGCGcca-----CGCGUC- -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 39182 | 0.66 | 0.420265 |
Target: 5'- cGCCCCGGGGCgGCgGCcuugucUGCGUu- -3' miRNA: 3'- cCGGGGUCCCGgCGgCGcc----ACGCGuc -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 71035 | 0.66 | 0.420265 |
Target: 5'- aGCCCCGcGGCCGaCCGCGucGUGCu- -3' miRNA: 3'- cCGGGGUcCCGGC-GGCGCcaCGCGuc -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 43287 | 0.66 | 0.420265 |
Target: 5'- cGCCCuCGGaGGCggaGCCGCGGc-UGCAGg -3' miRNA: 3'- cCGGG-GUC-CCGg--CGGCGCCacGCGUC- -5' |
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5911 | 5' | -67.1 | NC_001806.1 | + | 86443 | 0.66 | 0.428492 |
Target: 5'- aGGUCgaCCAGGGCCcuggaGgUGCGGUugauaaacGCGCAGu -3' miRNA: 3'- -CCGG--GGUCCCGG-----CgGCGCCA--------CGCGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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