miRNA display CGI


Results 1 - 20 of 229 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5912 3' -52.5 NC_001806.1 + 76502 0.66 0.987938
Target:  5'- cGCCGUggugcgcgCCaaACAGCAGc-GCGCCGa -3'
miRNA:   3'- -CGGCAa-------GGgcUGUUGUCuuUGCGGCg -5'
5912 3' -52.5 NC_001806.1 + 22326 0.66 0.987938
Target:  5'- gGCCugcUUCCgGAUcuCGG--GCGCCGCg -3'
miRNA:   3'- -CGGc--AAGGgCUGuuGUCuuUGCGGCG- -5'
5912 3' -52.5 NC_001806.1 + 1466 0.66 0.987938
Target:  5'- gGCCGUcgucgUCgCCGcGCAGCaccagcggGGggGCGUCGUc -3'
miRNA:   3'- -CGGCA-----AG-GGC-UGUUG--------UCuuUGCGGCG- -5'
5912 3' -52.5 NC_001806.1 + 63868 0.66 0.987787
Target:  5'- cGCUGcggUCCCGGgGcCGGAgucguuaAACGCCuGCa -3'
miRNA:   3'- -CGGCa--AGGGCUgUuGUCU-------UUGCGG-CG- -5'
5912 3' -52.5 NC_001806.1 + 34834 0.66 0.986366
Target:  5'- gGCCccUCCCGGCAGCc---ACGCCcccaGCg -3'
miRNA:   3'- -CGGcaAGGGCUGUUGucuuUGCGG----CG- -5'
5912 3' -52.5 NC_001806.1 + 65684 0.66 0.986366
Target:  5'- cGCCGgccUCCUGuccccCAACcGggGC-CCGCg -3'
miRNA:   3'- -CGGCa--AGGGCu----GUUGuCuuUGcGGCG- -5'
5912 3' -52.5 NC_001806.1 + 73295 0.66 0.986366
Target:  5'- cGCCGc-CCUGGCccGC-GAGGuCGCCGCg -3'
miRNA:   3'- -CGGCaaGGGCUGu-UGuCUUU-GCGGCG- -5'
5912 3' -52.5 NC_001806.1 + 146763 0.66 0.986366
Target:  5'- gGCUGUUCcacuCCGACG-CGGggGcCGUCGg -3'
miRNA:   3'- -CGGCAAG----GGCUGUuGUCuuU-GCGGCg -5'
5912 3' -52.5 NC_001806.1 + 99041 0.66 0.984641
Target:  5'- --aGUUCCCaACAaagACGGuGACGCCGa -3'
miRNA:   3'- cggCAAGGGcUGU---UGUCuUUGCGGCg -5'
5912 3' -52.5 NC_001806.1 + 9845 0.66 0.984641
Target:  5'- gGCUGUUCCaccaccGCGuucCGGuacuGCGCCGCg -3'
miRNA:   3'- -CGGCAAGGgc----UGUu--GUCuu--UGCGGCG- -5'
5912 3' -52.5 NC_001806.1 + 22435 0.66 0.984641
Target:  5'- gGCUGgggCCUGGCGcacGCGGcgGcCGCCGUg -3'
miRNA:   3'- -CGGCaa-GGGCUGU---UGUCuuU-GCGGCG- -5'
5912 3' -52.5 NC_001806.1 + 23307 0.66 0.984641
Target:  5'- gGCCcggCCCGGCcgccCGGAGGCGgcggcCCGCg -3'
miRNA:   3'- -CGGcaaGGGCUGuu--GUCUUUGC-----GGCG- -5'
5912 3' -52.5 NC_001806.1 + 98461 0.66 0.984641
Target:  5'- gGCCug-CUgGACuacACGGAgguccAGCGCCGCa -3'
miRNA:   3'- -CGGcaaGGgCUGu--UGUCU-----UUGCGGCG- -5'
5912 3' -52.5 NC_001806.1 + 117772 0.66 0.984641
Target:  5'- gGCCGagUCCUGGCuGCuauuucccucGAccgccacccgGACGCCGCg -3'
miRNA:   3'- -CGGCa-AGGGCUGuUGu---------CU----------UUGCGGCG- -5'
5912 3' -52.5 NC_001806.1 + 118781 0.66 0.984641
Target:  5'- gGCCGc-CCCGGacuCGGGAcgGCCGCa -3'
miRNA:   3'- -CGGCaaGGGCUguuGUCUUugCGGCG- -5'
5912 3' -52.5 NC_001806.1 + 50310 0.66 0.984641
Target:  5'- cGCCGUccggugcgUUuuGAC-GCGGGAG-GCCGCc -3'
miRNA:   3'- -CGGCA--------AGggCUGuUGUCUUUgCGGCG- -5'
5912 3' -52.5 NC_001806.1 + 56268 0.66 0.984641
Target:  5'- cCCGUcCCCGGgGuccuuccuguGCAGGcGACGCCGg -3'
miRNA:   3'- cGGCAaGGGCUgU----------UGUCU-UUGCGGCg -5'
5912 3' -52.5 NC_001806.1 + 1907 0.66 0.983529
Target:  5'- gGCCGaacacgcggCCCGAgGccagcaccgugcggcGCAGGucccGCGCCGCc -3'
miRNA:   3'- -CGGCaa-------GGGCUgU---------------UGUCUu---UGCGGCG- -5'
5912 3' -52.5 NC_001806.1 + 88616 0.66 0.982755
Target:  5'- uCCGc-CUCGAagugguccGCGGAGAUGCCGCg -3'
miRNA:   3'- cGGCaaGGGCUgu------UGUCUUUGCGGCG- -5'
5912 3' -52.5 NC_001806.1 + 74387 0.66 0.982755
Target:  5'- uCCG-UCCUGACG-----GACGCCGCc -3'
miRNA:   3'- cGGCaAGGGCUGUugucuUUGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.