miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5912 5' -56.3 NC_001806.1 + 144264 0.66 0.902764
Target:  5'- gGCcCAGagucauuguuuaugUGGCCGcgGGCCAGcAGACGg -3'
miRNA:   3'- -CGcGUCga------------ACCGGCa-CCGGUC-UUUGC- -5'
5912 5' -56.3 NC_001806.1 + 111215 0.66 0.902131
Target:  5'- uGCGCGGCcggGGCCucgauGUGGgUGGcgGCGg -3'
miRNA:   3'- -CGCGUCGaa-CCGG-----CACCgGUCuuUGC- -5'
5912 5' -56.3 NC_001806.1 + 27020 0.66 0.902131
Target:  5'- gGCGCcGggUGGCgGaGGCC-GAGGCGg -3'
miRNA:   3'- -CGCGuCgaACCGgCaCCGGuCUUUGC- -5'
5912 5' -56.3 NC_001806.1 + 6176 0.66 0.902131
Target:  5'- -aGCGGCUgcgGaGCaCGcGGaCCGGGAGCGg -3'
miRNA:   3'- cgCGUCGAa--C-CG-GCaCC-GGUCUUUGC- -5'
5912 5' -56.3 NC_001806.1 + 64956 0.66 0.898286
Target:  5'- gGCGuCGGCgcccgGGCCGggGGucccggggcaaacauCCAGggGCGc -3'
miRNA:   3'- -CGC-GUCGaa---CCGGCa-CC---------------GGUCuuUGC- -5'
5912 5' -56.3 NC_001806.1 + 59142 0.66 0.895676
Target:  5'- aGgGCAGCcgGGCCGgGGUCucGGguGCGg -3'
miRNA:   3'- -CgCGUCGaaCCGGCaCCGG--UCuuUGC- -5'
5912 5' -56.3 NC_001806.1 + 35269 0.66 0.895676
Target:  5'- aGCGC-GCggGaGUCGUGGCUuuGggGCGc -3'
miRNA:   3'- -CGCGuCGaaC-CGGCACCGGu-CuuUGC- -5'
5912 5' -56.3 NC_001806.1 + 37173 0.66 0.895676
Target:  5'- aCGCGGUUggcGaGCC-UGGCCAGAauGACa -3'
miRNA:   3'- cGCGUCGAa--C-CGGcACCGGUCU--UUGc -5'
5912 5' -56.3 NC_001806.1 + 125766 0.66 0.895676
Target:  5'- uGUGUucccUGGCCGUGGUCcucgaGGAGGCGg -3'
miRNA:   3'- -CGCGucgaACCGGCACCGG-----UCUUUGC- -5'
5912 5' -56.3 NC_001806.1 + 137574 0.66 0.895676
Target:  5'- aGCGC-GCccUGGCCGccuCCGGggGCGa -3'
miRNA:   3'- -CGCGuCGa-ACCGGCaccGGUCuuUGC- -5'
5912 5' -56.3 NC_001806.1 + 147779 0.66 0.895676
Target:  5'- aCGCGGgg-GGCCcggGGCgGGggGCGg -3'
miRNA:   3'- cGCGUCgaaCCGGca-CCGgUCuuUGC- -5'
5912 5' -56.3 NC_001806.1 + 12794 0.66 0.895018
Target:  5'- cGCGcCGGCgaucaGGCCcauguuguucgggGUGGCCGGggGa- -3'
miRNA:   3'- -CGC-GUCGaa---CCGG-------------CACCGGUCuuUgc -5'
5912 5' -56.3 NC_001806.1 + 4735 0.66 0.888991
Target:  5'- uCGCGGCcccgGGCCGgGGCCcGGucgccGGCGg -3'
miRNA:   3'- cGCGUCGaa--CCGGCaCCGGuCU-----UUGC- -5'
5912 5' -56.3 NC_001806.1 + 24498 0.66 0.888991
Target:  5'- cGCGCGaguaccGCcgGGCCGUGcuGCCGGcgcuGGACGg -3'
miRNA:   3'- -CGCGU------CGaaCCGGCAC--CGGUC----UUUGC- -5'
5912 5' -56.3 NC_001806.1 + 74601 0.66 0.888991
Target:  5'- aCGaCGGCg-GGCUGUcGCCAGAGGCc -3'
miRNA:   3'- cGC-GUCGaaCCGGCAcCGGUCUUUGc -5'
5912 5' -56.3 NC_001806.1 + 128228 0.66 0.888991
Target:  5'- cCGCGGCgucGGCCGUG-CaCAGGaaGACGc -3'
miRNA:   3'- cGCGUCGaa-CCGGCACcG-GUCU--UUGC- -5'
5912 5' -56.3 NC_001806.1 + 86750 0.66 0.886253
Target:  5'- cGCGCAuGUc-GGCCGccuccgggaaaucGGCCAGGAGCu -3'
miRNA:   3'- -CGCGU-CGaaCCGGCa------------CCGGUCUUUGc -5'
5912 5' -56.3 NC_001806.1 + 20389 0.66 0.882079
Target:  5'- gGCGUccGGCgggcgGGaCCGgggGGCcCGGGGACGg -3'
miRNA:   3'- -CGCG--UCGaa---CC-GGCa--CCG-GUCUUUGC- -5'
5912 5' -56.3 NC_001806.1 + 93444 0.66 0.882079
Target:  5'- aGCGCGGCaacGGCgaGUGGUCgacGGAcGCGg -3'
miRNA:   3'- -CGCGUCGaa-CCGg-CACCGG---UCUuUGC- -5'
5912 5' -56.3 NC_001806.1 + 3349 0.66 0.882079
Target:  5'- cGgGgGGCUggcgGGCCGggccccGGCCAGccccgGGACGg -3'
miRNA:   3'- -CgCgUCGAa---CCGGCa-----CCGGUC-----UUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.