miRNA display CGI


Results 21 - 40 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5912 5' -56.3 NC_001806.1 + 20389 0.66 0.882079
Target:  5'- gGCGUccGGCgggcgGGaCCGgggGGCcCGGGGACGg -3'
miRNA:   3'- -CGCG--UCGaa---CC-GGCa--CCG-GUCUUUGC- -5'
5912 5' -56.3 NC_001806.1 + 112151 0.66 0.882079
Target:  5'- aGCGCGGCacGGCCGa--CCAGAuGCu -3'
miRNA:   3'- -CGCGUCGaaCCGGCaccGGUCUuUGc -5'
5912 5' -56.3 NC_001806.1 + 39547 0.66 0.881375
Target:  5'- uGCGUAGUUcaagagguaggUGGCCGgGGCCAccaucuugugggcGGGACu -3'
miRNA:   3'- -CGCGUCGA-----------ACCGGCaCCGGU-------------CUUUGc -5'
5912 5' -56.3 NC_001806.1 + 150680 0.66 0.874944
Target:  5'- cGCGCuGGCggccGCCGaUGGCCAgucccgcccccGAGGCGg -3'
miRNA:   3'- -CGCG-UCGaac-CGGC-ACCGGU-----------CUUUGC- -5'
5912 5' -56.3 NC_001806.1 + 70473 0.66 0.874944
Target:  5'- gGCGCcGCcUGuauGCgGUGGUCGGGGACa -3'
miRNA:   3'- -CGCGuCGaAC---CGgCACCGGUCUUUGc -5'
5912 5' -56.3 NC_001806.1 + 16469 0.66 0.867592
Target:  5'- --cCAGCUUGGCCaUGGUCgagGGggGCu -3'
miRNA:   3'- cgcGUCGAACCGGcACCGG---UCuuUGc -5'
5912 5' -56.3 NC_001806.1 + 3282 0.66 0.867592
Target:  5'- cGCGCAgGCggGGCgCGUcGGCguGcgGCGg -3'
miRNA:   3'- -CGCGU-CGaaCCG-GCA-CCGguCuuUGC- -5'
5912 5' -56.3 NC_001806.1 + 94175 0.66 0.867592
Target:  5'- cGCuGCGGCgucgucugaGGCCG-GGCCuGGAGGCc -3'
miRNA:   3'- -CG-CGUCGaa-------CCGGCaCCGG-UCUUUGc -5'
5912 5' -56.3 NC_001806.1 + 19503 0.67 0.860026
Target:  5'- gGCGCuugcGCUU-GCgCGUGcCCAGggGCGg -3'
miRNA:   3'- -CGCGu---CGAAcCG-GCACcGGUCuuUGC- -5'
5912 5' -56.3 NC_001806.1 + 41424 0.67 0.860026
Target:  5'- uGCcCAGCgc-GCCGUGGUCGGGGuGCGc -3'
miRNA:   3'- -CGcGUCGaacCGGCACCGGUCUU-UGC- -5'
5912 5' -56.3 NC_001806.1 + 42061 0.67 0.860026
Target:  5'- uGCGUGGCUaGGCgCGgggGGCU-GAAACa -3'
miRNA:   3'- -CGCGUCGAaCCG-GCa--CCGGuCUUUGc -5'
5912 5' -56.3 NC_001806.1 + 70858 0.67 0.860026
Target:  5'- gGCGCGGCcgcgGGacccgagcCCGUGGCCgaguuuguccAGGAACu -3'
miRNA:   3'- -CGCGUCGaa--CC--------GGCACCGG----------UCUUUGc -5'
5912 5' -56.3 NC_001806.1 + 123243 0.67 0.860026
Target:  5'- aCGCGGCccUGcGCCGacgccUGGCC-GAGACGc -3'
miRNA:   3'- cGCGUCGa-AC-CGGC-----ACCGGuCUUUGC- -5'
5912 5' -56.3 NC_001806.1 + 132892 0.67 0.860026
Target:  5'- cGCGCccAGCUccuggcGGCCcUGGCCgaccucgggGGGAGCGg -3'
miRNA:   3'- -CGCG--UCGAa-----CCGGcACCGG---------UCUUUGC- -5'
5912 5' -56.3 NC_001806.1 + 22381 0.67 0.855388
Target:  5'- aGCGUGGCgcgGGCCGUGccccaccugggcuacGCCAu-GGCGg -3'
miRNA:   3'- -CGCGUCGaa-CCGGCAC---------------CGGUcuUUGC- -5'
5912 5' -56.3 NC_001806.1 + 11856 0.67 0.852255
Target:  5'- gGgGCGGgUUGguauacgcucGCCGgGGCCAGAcGCGg -3'
miRNA:   3'- -CgCGUCgAAC----------CGGCaCCGGUCUuUGC- -5'
5912 5' -56.3 NC_001806.1 + 46328 0.67 0.852255
Target:  5'- cGCGCAGg--GGC--UGGCCAGAAAg- -3'
miRNA:   3'- -CGCGUCgaaCCGgcACCGGUCUUUgc -5'
5912 5' -56.3 NC_001806.1 + 30033 0.67 0.852255
Target:  5'- gGCGgGGC--GGCCGaggGGCCGGAcgGGCc -3'
miRNA:   3'- -CGCgUCGaaCCGGCa--CCGGUCU--UUGc -5'
5912 5' -56.3 NC_001806.1 + 4829 0.67 0.847496
Target:  5'- gGgGCGGCgaGGCCGcggGGUCGGGcgucgggaucguccgGACGg -3'
miRNA:   3'- -CgCGUCGaaCCGGCa--CCGGUCU---------------UUGC- -5'
5912 5' -56.3 NC_001806.1 + 23058 0.67 0.844284
Target:  5'- gGCgGCAGCgaGGCCGccgUGGCCGccguGCGc -3'
miRNA:   3'- -CG-CGUCGaaCCGGC---ACCGGUcuu-UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.