miRNA display CGI


Results 1 - 20 of 33 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5914 3' -57.7 NC_001806.1 + 5081 0.66 0.834998
Target:  5'- uGGGCUcgggGUGGgcGGCGGCCCGu-- -3'
miRNA:   3'- gCCUGAaagaCGCC--CCGCCGGGUuua -5'
5914 3' -57.7 NC_001806.1 + 117871 0.66 0.826652
Target:  5'- gCGGGCgaugUCgGCGGGGgcCGaGCCCGu-- -3'
miRNA:   3'- -GCCUGaa--AGaCGCCCC--GC-CGGGUuua -5'
5914 3' -57.7 NC_001806.1 + 2805 0.66 0.826652
Target:  5'- gCGGGCUgg--GCGGGGgCgGGCUCGGGc -3'
miRNA:   3'- -GCCUGAaagaCGCCCC-G-CCGGGUUUa -5'
5914 3' -57.7 NC_001806.1 + 150099 0.66 0.818131
Target:  5'- aGGcCca-CcGCGGGGCGGCCCc--- -3'
miRNA:   3'- gCCuGaaaGaCGCCCCGCCGGGuuua -5'
5914 3' -57.7 NC_001806.1 + 23985 0.66 0.818131
Target:  5'- gCGGGCUgucCUGCcugcuGGCGGCCCu--- -3'
miRNA:   3'- -GCCUGAaa-GACGcc---CCGCCGGGuuua -5'
5914 3' -57.7 NC_001806.1 + 19096 0.66 0.809441
Target:  5'- uGGGCUUggggCcGaCGGGGUgggGGCCCGGGg -3'
miRNA:   3'- gCCUGAAa---GaC-GCCCCG---CCGGGUUUa -5'
5914 3' -57.7 NC_001806.1 + 147775 0.66 0.809441
Target:  5'- gCGGAC-----GCGGGG-GGCCCGGGg -3'
miRNA:   3'- -GCCUGaaagaCGCCCCgCCGGGUUUa -5'
5914 3' -57.7 NC_001806.1 + 22258 0.66 0.80059
Target:  5'- cCGGACg--CggagGCcauGGGGUGGCuCCAGAa -3'
miRNA:   3'- -GCCUGaaaGa---CG---CCCCGCCG-GGUUUa -5'
5914 3' -57.7 NC_001806.1 + 69592 0.66 0.80059
Target:  5'- aCGGGCggcUCUGCGaGGCGGUCg---- -3'
miRNA:   3'- -GCCUGaa-AGACGCcCCGCCGGguuua -5'
5914 3' -57.7 NC_001806.1 + 49593 0.67 0.773163
Target:  5'- aGGACgg-CgGCGGGGCccguuccccGCCCAAGg -3'
miRNA:   3'- gCCUGaaaGaCGCCCCGc--------CGGGUUUa -5'
5914 3' -57.7 NC_001806.1 + 144601 0.67 0.773163
Target:  5'- cCGGGCccccCUGCagccGGGGCGGCCa---- -3'
miRNA:   3'- -GCCUGaaa-GACG----CCCCGCCGGguuua -5'
5914 3' -57.7 NC_001806.1 + 5765 0.67 0.763759
Target:  5'- aCGGGCaggggGCGGGGCccgGGCCCcGAc -3'
miRNA:   3'- -GCCUGaaagaCGCCCCG---CCGGGuUUa -5'
5914 3' -57.7 NC_001806.1 + 93276 0.67 0.763759
Target:  5'- gGGGCauuaUCUccgaggGCGGGGCGGCCg---- -3'
miRNA:   3'- gCCUGaa--AGA------CGCCCCGCCGGguuua -5'
5914 3' -57.7 NC_001806.1 + 76959 0.68 0.725066
Target:  5'- uCGGcCgcgUUC-GCGGGGgGGCCUGGAa -3'
miRNA:   3'- -GCCuGa--AAGaCGCCCCgCCGGGUUUa -5'
5914 3' -57.7 NC_001806.1 + 9236 0.68 0.725066
Target:  5'- gCGGGCggUCaUGuCGGGGgGGUCCGc-- -3'
miRNA:   3'- -GCCUGaaAG-AC-GCCCCgCCGGGUuua -5'
5914 3' -57.7 NC_001806.1 + 48840 0.68 0.723093
Target:  5'- aCGGACgggugauugugUC-GCaGGGCGGCCCGc-- -3'
miRNA:   3'- -GCCUGaa---------AGaCGcCCCGCCGGGUuua -5'
5914 3' -57.7 NC_001806.1 + 130071 0.68 0.705205
Target:  5'- uGGACgg-CUcCGGGGCGcGCUCGGAg -3'
miRNA:   3'- gCCUGaaaGAcGCCCCGC-CGGGUUUa -5'
5914 3' -57.7 NC_001806.1 + 23835 0.68 0.695177
Target:  5'- uCGGGCccgCUGCGccgcauGGCGGCCUGGAUg -3'
miRNA:   3'- -GCCUGaaaGACGCc-----CCGCCGGGUUUA- -5'
5914 3' -57.7 NC_001806.1 + 130395 0.68 0.695177
Target:  5'- aGGACUucugucuguUUUUGCGGGGCGuacauuucgacGCCCu--- -3'
miRNA:   3'- gCCUGA---------AAGACGCCCCGC-----------CGGGuuua -5'
5914 3' -57.7 NC_001806.1 + 30028 0.68 0.695177
Target:  5'- gCGGAg-----GCGGGGCGGCCgAGGg -3'
miRNA:   3'- -GCCUgaaagaCGCCCCGCCGGgUUUa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.