miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5914 5' -58.5 NC_001806.1 + 20173 0.66 0.8474
Target:  5'- ----cCGGGCcCGCCcccgGGGCCGGcgCGGa -3'
miRNA:   3'- cauauGCCUGcGCGG----CCCGGUCa-GCC- -5'
5914 5' -58.5 NC_001806.1 + 76151 0.66 0.8474
Target:  5'- ---gGgGGGCGUGCCGGcccugcGCCAGUaCGu -3'
miRNA:   3'- cauaUgCCUGCGCGGCC------CGGUCA-GCc -5'
5914 5' -58.5 NC_001806.1 + 15332 0.66 0.8474
Target:  5'- -aGU-CGGugGUGCCggucuGGGUCAuGUUGGg -3'
miRNA:   3'- caUAuGCCugCGCGG-----CCCGGU-CAGCC- -5'
5914 5' -58.5 NC_001806.1 + 43171 0.66 0.8474
Target:  5'- --uUGCGuccGCGCGCCcaaGGGCCAGUa-- -3'
miRNA:   3'- cauAUGCc--UGCGCGG---CCCGGUCAgcc -5'
5914 5' -58.5 NC_001806.1 + 1935 0.66 0.839552
Target:  5'- -cGUGCGGcgcagguccCGCGCCGccGGCCAGcgcaCGGc -3'
miRNA:   3'- caUAUGCCu--------GCGCGGC--CCGGUCa---GCC- -5'
5914 5' -58.5 NC_001806.1 + 4736 0.66 0.839552
Target:  5'- ---cGCGGcccCGgGCCGGGgcCCGGUCGc -3'
miRNA:   3'- cauaUGCCu--GCgCGGCCC--GGUCAGCc -5'
5914 5' -58.5 NC_001806.1 + 62304 0.66 0.839552
Target:  5'- ---gACaGugGCGgCGGGCCuGgcgCGGa -3'
miRNA:   3'- cauaUGcCugCGCgGCCCGGuCa--GCC- -5'
5914 5' -58.5 NC_001806.1 + 117359 0.66 0.839552
Target:  5'- uGUGUGCGGAgGUccgGCCuGGGCCGcgaGGu -3'
miRNA:   3'- -CAUAUGCCUgCG---CGG-CCCGGUcagCC- -5'
5914 5' -58.5 NC_001806.1 + 36332 0.66 0.839552
Target:  5'- cGUGUACucucccgccgaGGACGCGCCGGacCCAGa--- -3'
miRNA:   3'- -CAUAUG-----------CCUGCGCGGCCc-GGUCagcc -5'
5914 5' -58.5 NC_001806.1 + 84862 0.66 0.831526
Target:  5'- ---gGCGGuCGCGCUccucuGcGGCCGG-CGGg -3'
miRNA:   3'- cauaUGCCuGCGCGG-----C-CCGGUCaGCC- -5'
5914 5' -58.5 NC_001806.1 + 126875 0.66 0.831526
Target:  5'- -----aGGACgGCGCCGGGgCucUCGGg -3'
miRNA:   3'- cauaugCCUG-CGCGGCCCgGucAGCC- -5'
5914 5' -58.5 NC_001806.1 + 26996 0.66 0.831526
Target:  5'- ---aGCGGGC-CGaCCGGGCuCGGUucCGGc -3'
miRNA:   3'- cauaUGCCUGcGC-GGCCCG-GUCA--GCC- -5'
5914 5' -58.5 NC_001806.1 + 30315 0.66 0.831526
Target:  5'- ---cGCGGacGCGCGCCGuGuGCCccAGUCGc -3'
miRNA:   3'- cauaUGCC--UGCGCGGC-C-CGG--UCAGCc -5'
5914 5' -58.5 NC_001806.1 + 41728 0.66 0.831526
Target:  5'- ---gGCGGGCGCaaaCgCGGGCCAcccgCGGg -3'
miRNA:   3'- cauaUGCCUGCGc--G-GCCCGGUca--GCC- -5'
5914 5' -58.5 NC_001806.1 + 93853 0.66 0.826628
Target:  5'- ---aACGcACGCGCCGccgacucccggcuuGCCGGUCGGc -3'
miRNA:   3'- cauaUGCcUGCGCGGCc-------------CGGUCAGCC- -5'
5914 5' -58.5 NC_001806.1 + 100317 0.66 0.823329
Target:  5'- -gGUugGGGCGCgGCauGGCCGG-CGa -3'
miRNA:   3'- caUAugCCUGCG-CGgcCCGGUCaGCc -5'
5914 5' -58.5 NC_001806.1 + 89165 0.66 0.823329
Target:  5'- -aGUACGuAUgGCGCUGGGuuggcCCGGUCGGc -3'
miRNA:   3'- caUAUGCcUG-CGCGGCCC-----GGUCAGCC- -5'
5914 5' -58.5 NC_001806.1 + 66020 0.66 0.823329
Target:  5'- ---aGgGGugGgGCgCGGGCCAGUUu- -3'
miRNA:   3'- cauaUgCCugCgCG-GCCCGGUCAGcc -5'
5914 5' -58.5 NC_001806.1 + 23459 0.66 0.823329
Target:  5'- ---cGCGG-CGCcCCGGGCCGccgCGGc -3'
miRNA:   3'- cauaUGCCuGCGcGGCCCGGUca-GCC- -5'
5914 5' -58.5 NC_001806.1 + 136533 0.66 0.823329
Target:  5'- ---gACGGGC-CGCuCGGGCCGccCGGc -3'
miRNA:   3'- cauaUGCCUGcGCG-GCCCGGUcaGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.