miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5915 3' -61.3 NC_001806.1 + 38794 0.66 0.664937
Target:  5'- uACCCCgUUCCGcuuccgcgGggacccGGGCGGGGGUGg -3'
miRNA:   3'- uUGGGG-AAGGCa-------Cac----CCCGCCCUCAU- -5'
5915 3' -61.3 NC_001806.1 + 99558 0.66 0.654944
Target:  5'- uGCCuCCgguugggaUCCG-GUGGcGGCGGGGGg- -3'
miRNA:   3'- uUGG-GGa-------AGGCaCACC-CCGCCCUCau -5'
5915 3' -61.3 NC_001806.1 + 137578 0.66 0.654944
Target:  5'- cGCCCUggCCGccuccgGGGGCGaGGAGUu -3'
miRNA:   3'- uUGGGGaaGGCaca---CCCCGC-CCUCAu -5'
5915 3' -61.3 NC_001806.1 + 55058 0.66 0.644933
Target:  5'- uGACCCUccaucaCCGcGUGGGGCuGGAGg- -3'
miRNA:   3'- -UUGGGGaa----GGCaCACCCCGcCCUCau -5'
5915 3' -61.3 NC_001806.1 + 9745 0.66 0.64293
Target:  5'- cGCCCCUaaccgcagggcgCCGUGgguugGGGGCgcgugGGGAGg- -3'
miRNA:   3'- uUGGGGAa-----------GGCACa----CCCCG-----CCCUCau -5'
5915 3' -61.3 NC_001806.1 + 27920 0.66 0.62489
Target:  5'- cGCCCCUUUgGggagGGgaaaGGCGGGGGUAu -3'
miRNA:   3'- uUGGGGAAGgCaca-CC----CCGCCCUCAU- -5'
5915 3' -61.3 NC_001806.1 + 49014 0.67 0.591892
Target:  5'- uACCCCggccuccaUCCGcgcUGUGGGGUcuuuuucuuuuuugGGGGGUAg -3'
miRNA:   3'- uUGGGGa-------AGGC---ACACCCCG--------------CCCUCAU- -5'
5915 3' -61.3 NC_001806.1 + 111313 0.67 0.574997
Target:  5'- uGCaCCCgUCgCGUucuaacggggGUGGGGCGGGGGg- -3'
miRNA:   3'- uUG-GGGaAG-GCA----------CACCCCGCCCUCau -5'
5915 3' -61.3 NC_001806.1 + 81821 0.68 0.506921
Target:  5'- aGACCCCgcagggCC-UGUGccacGGGCGGGAGg- -3'
miRNA:   3'- -UUGGGGaa----GGcACAC----CCCGCCCUCau -5'
5915 3' -61.3 NC_001806.1 + 20719 0.69 0.48808
Target:  5'- gGGCCCg--CCGgg-GGGGCGGGGGg- -3'
miRNA:   3'- -UUGGGgaaGGCacaCCCCGCCCUCau -5'
5915 3' -61.3 NC_001806.1 + 28712 0.69 0.451436
Target:  5'- gGACCCCcgacUCCG-GUGcgucuggaGGGCGGGAGa- -3'
miRNA:   3'- -UUGGGGa---AGGCaCAC--------CCCGCCCUCau -5'
5915 3' -61.3 NC_001806.1 + 128873 0.71 0.366976
Target:  5'- cAUgCCUUUCGUGgGGGGCGcGGAGUc -3'
miRNA:   3'- uUGgGGAAGGCACaCCCCGC-CCUCAu -5'
5915 3' -61.3 NC_001806.1 + 45498 0.72 0.314669
Target:  5'- gAACCCgccCUGUGUGGGGUGaGGGGUGg -3'
miRNA:   3'- -UUGGGgaaGGCACACCCCGC-CCUCAU- -5'
5915 3' -61.3 NC_001806.1 + 2454 0.73 0.280883
Target:  5'- cGGCCCCcggcggccCCGUG-GGGGUGGGGGUu -3'
miRNA:   3'- -UUGGGGaa------GGCACaCCCCGCCCUCAu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.