miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5916 3' -57.4 NC_001806.1 + 23823 0.66 0.881223
Target:  5'- -cCCCUGCGCg--CcUCgGGCCCGCUg -3'
miRNA:   3'- gaGGGGCGCGguaGuAGaUUGGGCGG- -5'
5916 3' -57.4 NC_001806.1 + 28905 0.66 0.881223
Target:  5'- aUCCCCcC-CCAU--UCUuACCCGCCc -3'
miRNA:   3'- gAGGGGcGcGGUAguAGAuUGGGCGG- -5'
5916 3' -57.4 NC_001806.1 + 78591 0.66 0.881223
Target:  5'- -gCCCaCGgGCCAgcaCGUCgccguGCCgGCCg -3'
miRNA:   3'- gaGGG-GCgCGGUa--GUAGau---UGGgCGG- -5'
5916 3' -57.4 NC_001806.1 + 45762 0.66 0.881223
Target:  5'- -aCCCC-CGCCGUCcg--AACCCagGCCu -3'
miRNA:   3'- gaGGGGcGCGGUAGuagaUUGGG--CGG- -5'
5916 3' -57.4 NC_001806.1 + 72148 0.66 0.881223
Target:  5'- -gCCCUGCGCCcccuGUCGUacacgcucCUAACCauugGCCc -3'
miRNA:   3'- gaGGGGCGCGG----UAGUA--------GAUUGGg---CGG- -5'
5916 3' -57.4 NC_001806.1 + 104814 0.66 0.881223
Target:  5'- -cCCCCG-GCCcucacccUCAUCUucgaCCGCCa -3'
miRNA:   3'- gaGGGGCgCGGu------AGUAGAuug-GGCGG- -5'
5916 3' -57.4 NC_001806.1 + 131858 0.66 0.881223
Target:  5'- gUCUCCGUccagGCCGUCGUggCggccGCCCGCg -3'
miRNA:   3'- gAGGGGCG----CGGUAGUA--Gau--UGGGCGg -5'
5916 3' -57.4 NC_001806.1 + 75688 0.66 0.878431
Target:  5'- -gCCCagCGCGCCcgCAguagccacgagcgCUGGgCCGCCg -3'
miRNA:   3'- gaGGG--GCGCGGuaGUa------------GAUUgGGCGG- -5'
5916 3' -57.4 NC_001806.1 + 21141 0.66 0.874178
Target:  5'- gCUCCCCGgGCCc-CAcCgacGGgCCGCCg -3'
miRNA:   3'- -GAGGGGCgCGGuaGUaGa--UUgGGCGG- -5'
5916 3' -57.4 NC_001806.1 + 49144 0.66 0.874178
Target:  5'- -cCCCCGCGCC-UC-----GCCCGUg -3'
miRNA:   3'- gaGGGGCGCGGuAGuagauUGGGCGg -5'
5916 3' -57.4 NC_001806.1 + 80323 0.66 0.874178
Target:  5'- aUCUgCGCGCCcccgggggCAUUUGACCgucaGCCg -3'
miRNA:   3'- gAGGgGCGCGGua------GUAGAUUGGg---CGG- -5'
5916 3' -57.4 NC_001806.1 + 99951 0.66 0.874178
Target:  5'- -gCCgCGCGCCGggaGUCgacCCCGCg -3'
miRNA:   3'- gaGGgGCGCGGUag-UAGauuGGGCGg -5'
5916 3' -57.4 NC_001806.1 + 116305 0.66 0.874178
Target:  5'- uUCCCCGCG--GUCAUC--ACCCGg- -3'
miRNA:   3'- gAGGGGCGCggUAGUAGauUGGGCgg -5'
5916 3' -57.4 NC_001806.1 + 40165 0.66 0.874178
Target:  5'- aUgUCCGCGCCGUgGcgcGACUCGCCc -3'
miRNA:   3'- gAgGGGCGCGGUAgUagaUUGGGCGG- -5'
5916 3' -57.4 NC_001806.1 + 112391 0.66 0.874178
Target:  5'- cCUCCguggCCGUGCCc-CGUCUGACgcaUGCCg -3'
miRNA:   3'- -GAGG----GGCGCGGuaGUAGAUUGg--GCGG- -5'
5916 3' -57.4 NC_001806.1 + 53417 0.66 0.866923
Target:  5'- cCUCcgCCCGUGCUGcCGUCgcuaGACCaCGCCc -3'
miRNA:   3'- -GAG--GGGCGCGGUaGUAGa---UUGG-GCGG- -5'
5916 3' -57.4 NC_001806.1 + 101251 0.66 0.866923
Target:  5'- gUCCCCGCuGUCAUaCAgggCcaaaAACCCaGCCa -3'
miRNA:   3'- gAGGGGCG-CGGUA-GUa--Ga---UUGGG-CGG- -5'
5916 3' -57.4 NC_001806.1 + 17455 0.66 0.866923
Target:  5'- -aCCCCG-GUCGUCGUUcguCCgGCCa -3'
miRNA:   3'- gaGGGGCgCGGUAGUAGauuGGgCGG- -5'
5916 3' -57.4 NC_001806.1 + 144143 0.66 0.859463
Target:  5'- -cCCCCGCGa----GUCc-ACCCGCCg -3'
miRNA:   3'- gaGGGGCGCgguagUAGauUGGGCGG- -5'
5916 3' -57.4 NC_001806.1 + 71304 0.66 0.857186
Target:  5'- uCUCCCCGCGCCuau-----GCCCauggacgcacagaaGCCg -3'
miRNA:   3'- -GAGGGGCGCGGuaguagauUGGG--------------CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.