miRNA display CGI


Results 1 - 20 of 66 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5916 5' -53.2 NC_001806.1 + 74392 0.65 0.977816
Target:  5'- cCUGACGGA-CgccGCCAACCaagggcugauagAACGCa -3'
miRNA:   3'- -GACUGCCUaGacaCGGUUGGg-----------UUGCG- -5'
5916 5' -53.2 NC_001806.1 + 147893 0.65 0.977576
Target:  5'- -gGGCGGGUCUGUugacaagggggcccGuCCGGCCCcuCGg -3'
miRNA:   3'- gaCUGCCUAGACA--------------C-GGUUGGGuuGCg -5'
5916 5' -53.2 NC_001806.1 + 22563 0.66 0.975844
Target:  5'- gCUGACGGGggccgCgggGaGCCccGGCgCCGGCGCa -3'
miRNA:   3'- -GACUGCCUa----Ga--CaCGG--UUG-GGUUGCG- -5'
5916 5' -53.2 NC_001806.1 + 127752 0.66 0.975844
Target:  5'- -gGGCGGGcugCcggGUGCgGGCCUGugGCg -3'
miRNA:   3'- gaCUGCCUa--Ga--CACGgUUGGGUugCG- -5'
5916 5' -53.2 NC_001806.1 + 3645 0.66 0.975589
Target:  5'- -cGGCGGcgacccccucgucAUCUGcGCCGGCgCCGGgGCu -3'
miRNA:   3'- gaCUGCC-------------UAGACaCGGUUG-GGUUgCG- -5'
5916 5' -53.2 NC_001806.1 + 49905 0.66 0.973476
Target:  5'- cCUGACGGAUCgucgaacaaaaaCCAGCCC--CGCc -3'
miRNA:   3'- -GACUGCCUAGacac--------GGUUGGGuuGCG- -5'
5916 5' -53.2 NC_001806.1 + 150111 0.66 0.973203
Target:  5'- -gGGCGGccccGUCcccgGgGaCCAACCCGGCGCc -3'
miRNA:   3'- gaCUGCC----UAGa---CaC-GGUUGGGUUGCG- -5'
5916 5' -53.2 NC_001806.1 + 113825 0.66 0.973203
Target:  5'- gUGugGGA-CUGUGaCGcCCUGAUGCg -3'
miRNA:   3'- gACugCCUaGACACgGUuGGGUUGCG- -5'
5916 5' -53.2 NC_001806.1 + 85323 0.66 0.973203
Target:  5'- uUGGCcgGGAUUcuUG-GCCAACCCGA-GCu -3'
miRNA:   3'- gACUG--CCUAG--ACaCGGUUGGGUUgCG- -5'
5916 5' -53.2 NC_001806.1 + 66480 0.66 0.973203
Target:  5'- aCUGGgGGuucgugacCUG-GCCAGCCgagCAACGCg -3'
miRNA:   3'- -GACUgCCua------GACaCGGUUGG---GUUGCG- -5'
5916 5' -53.2 NC_001806.1 + 72030 0.66 0.970359
Target:  5'- -cGGCGGAcugcgCUGUGUCuuCUC-GCGCg -3'
miRNA:   3'- gaCUGCCUa----GACACGGuuGGGuUGCG- -5'
5916 5' -53.2 NC_001806.1 + 69151 0.66 0.970359
Target:  5'- -gGACGGAcgUG-GCCGuguuugauCCCGACGUg -3'
miRNA:   3'- gaCUGCCUagACaCGGUu-------GGGUUGCG- -5'
5916 5' -53.2 NC_001806.1 + 23210 0.66 0.970063
Target:  5'- gCUGGCGGcggCg--GCCAGCgcaccggacgccgCCGACGCg -3'
miRNA:   3'- -GACUGCCua-GacaCGGUUG-------------GGUUGCG- -5'
5916 5' -53.2 NC_001806.1 + 54070 0.66 0.967305
Target:  5'- aUGAUGG-UCccgacGCCAACCCAGgcCGCg -3'
miRNA:   3'- gACUGCCuAGaca--CGGUUGGGUU--GCG- -5'
5916 5' -53.2 NC_001806.1 + 21927 0.66 0.967305
Target:  5'- -cGGCGG---UG-GCCGGCCgCGACGCc -3'
miRNA:   3'- gaCUGCCuagACaCGGUUGG-GUUGCG- -5'
5916 5' -53.2 NC_001806.1 + 27028 0.66 0.966347
Target:  5'- gUGGCGGAggccgaggcggucaUCgggccGUGCCuggGGCCCGAgGCc -3'
miRNA:   3'- gACUGCCU--------------AGa----CACGG---UUGGGUUgCG- -5'
5916 5' -53.2 NC_001806.1 + 35302 0.66 0.964034
Target:  5'- aUGGCuucGGAggcg-GCgCAACCCGACGCg -3'
miRNA:   3'- gACUG---CCUagacaCG-GUUGGGUUGCG- -5'
5916 5' -53.2 NC_001806.1 + 99482 0.67 0.960542
Target:  5'- -cGGCGGcgCgg-GCCGugUCAACGUc -3'
miRNA:   3'- gaCUGCCuaGacaCGGUugGGUUGCG- -5'
5916 5' -53.2 NC_001806.1 + 76064 0.67 0.960542
Target:  5'- gCUGGCGGGggggcugCUGgaGCgGGCCCAG-GCg -3'
miRNA:   3'- -GACUGCCUa------GACa-CGgUUGGGUUgCG- -5'
5916 5' -53.2 NC_001806.1 + 51294 0.67 0.960542
Target:  5'- gCUGGCGcGGUgcCUGacgccUGCCAACCUGAucCGCg -3'
miRNA:   3'- -GACUGC-CUA--GAC-----ACGGUUGGGUU--GCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.