miRNA display CGI


Results 1 - 20 of 23 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5922 3' -53.3 NC_001806.1 + 93454 0.66 0.95329
Target:  5'- cGGCgaGUGGUcGAcgGACGCGGCCcuggaggugGCGCAc -3'
miRNA:   3'- -UCG--UACUA-CU--UUGUGCCGGa--------CGCGUu -5'
5922 3' -53.3 NC_001806.1 + 115140 0.66 0.95329
Target:  5'- cGCAggGAUGGAcCACGGCCaggacgccgUGUGUGAg -3'
miRNA:   3'- uCGUa-CUACUUuGUGCCGG---------ACGCGUU- -5'
5922 3' -53.3 NC_001806.1 + 136979 0.66 0.949009
Target:  5'- gAGCGUGGUGcggucauGGCgGCGGCCgGCGgGGa -3'
miRNA:   3'- -UCGUACUACu------UUG-UGCCGGaCGCgUU- -5'
5922 3' -53.3 NC_001806.1 + 95292 0.66 0.944475
Target:  5'- cGCAUGGgggcggGggGCGCGGCggacGCGCc- -3'
miRNA:   3'- uCGUACUa-----CuuUGUGCCGga--CGCGuu -5'
5922 3' -53.3 NC_001806.1 + 120842 0.66 0.944475
Target:  5'- cGGCAUGGcgcagcUGGGACcccgGCGGCCccugGCGCc- -3'
miRNA:   3'- -UCGUACU------ACUUUG----UGCCGGa---CGCGuu -5'
5922 3' -53.3 NC_001806.1 + 149313 0.66 0.944475
Target:  5'- uGCGUG-UGAguaAGgGgGGCCUGCGUAu -3'
miRNA:   3'- uCGUACuACU---UUgUgCCGGACGCGUu -5'
5922 3' -53.3 NC_001806.1 + 22084 0.66 0.939685
Target:  5'- gGGCG-GGUGcuguACgGCGGCCUGgGCGAc -3'
miRNA:   3'- -UCGUaCUACuu--UG-UGCCGGACgCGUU- -5'
5922 3' -53.3 NC_001806.1 + 2837 0.66 0.938696
Target:  5'- gGGCGUGGaggGggGCGCGGgCgcggggagggggGCGCGGg -3'
miRNA:   3'- -UCGUACUa--CuuUGUGCCgGa-----------CGCGUU- -5'
5922 3' -53.3 NC_001806.1 + 50648 0.66 0.934637
Target:  5'- gGGCGUGcgGGGACGCGcaCCgGCGCc- -3'
miRNA:   3'- -UCGUACuaCUUUGUGCc-GGaCGCGuu -5'
5922 3' -53.3 NC_001806.1 + 140573 0.66 0.933596
Target:  5'- cGCGUGuaauacuuGCGCGGCUUGCGgGAc -3'
miRNA:   3'- uCGUACuacuu---UGUGCCGGACGCgUU- -5'
5922 3' -53.3 NC_001806.1 + 133125 0.67 0.929329
Target:  5'- cAGCucGGUGAAGuuCGCGGUCUGCGgGGg -3'
miRNA:   3'- -UCGuaCUACUUU--GUGCCGGACGCgUU- -5'
5922 3' -53.3 NC_001806.1 + 102263 0.67 0.917931
Target:  5'- cGGC-UGA-GGAACGCGGCggcgGCGCGGu -3'
miRNA:   3'- -UCGuACUaCUUUGUGCCGga--CGCGUU- -5'
5922 3' -53.3 NC_001806.1 + 38593 0.67 0.91122
Target:  5'- aAGCGUGAccgugguUGGAACACGG-CUGCaCAc -3'
miRNA:   3'- -UCGUACU-------ACUUUGUGCCgGACGcGUu -5'
5922 3' -53.3 NC_001806.1 + 128511 0.68 0.898895
Target:  5'- cAGCGUGGcgUGcgGCAUGGCCaUGCGgGc -3'
miRNA:   3'- -UCGUACU--ACuuUGUGCCGG-ACGCgUu -5'
5922 3' -53.3 NC_001806.1 + 75972 0.68 0.898895
Target:  5'- cGCAUcGAcUGGAGCGCGGCCUucgggGcCGCGg -3'
miRNA:   3'- uCGUA-CU-ACUUUGUGCCGGA-----C-GCGUu -5'
5922 3' -53.3 NC_001806.1 + 39528 0.68 0.892041
Target:  5'- cGCucGAUacGAUGCGGCCUGCGUAGu -3'
miRNA:   3'- uCGuaCUAcuUUGUGCCGGACGCGUU- -5'
5922 3' -53.3 NC_001806.1 + 23015 0.69 0.86219
Target:  5'- cGCGcUGGUGcu-CAUGcGCCUGCGCGGg -3'
miRNA:   3'- uCGU-ACUACuuuGUGC-CGGACGCGUU- -5'
5922 3' -53.3 NC_001806.1 + 88858 0.69 0.854147
Target:  5'- cGCGc-GUGGAACugGGCCgcGCGCAu -3'
miRNA:   3'- uCGUacUACUUUGugCCGGa-CGCGUu -5'
5922 3' -53.3 NC_001806.1 + 45282 0.69 0.854147
Target:  5'- uAGCGgcggGAGACGCgGGCCcGCGCGGg -3'
miRNA:   3'- -UCGUacuaCUUUGUG-CCGGaCGCGUU- -5'
5922 3' -53.3 NC_001806.1 + 40564 0.7 0.810803
Target:  5'- gGGCGUGAaaaugGAAGCGCcgcgggucGGCgUGCGCGg -3'
miRNA:   3'- -UCGUACUa----CUUUGUG--------CCGgACGCGUu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.