miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5922 5' -62 NC_001806.1 + 3171 0.67 0.577482
Target:  5'- cGgCGCGCacggcggccacgGcgGCCuCGCUGCCGCCg -3'
miRNA:   3'- aCaGCGCGa-----------CuaCGG-GUGGCGGCGGa -5'
5922 5' -62 NC_001806.1 + 24368 0.67 0.569658
Target:  5'- -uUCGCGCgcgugGAgGCCgCGCaCGCgCGCCUg -3'
miRNA:   3'- acAGCGCGa----CUaCGG-GUG-GCG-GCGGA- -5'
5922 5' -62 NC_001806.1 + 114060 0.67 0.569658
Target:  5'- --aCGUGaUGGUGCCCGCCuucucgcgggGCCGCUg -3'
miRNA:   3'- acaGCGCgACUACGGGUGG----------CGGCGGa -5'
5922 5' -62 NC_001806.1 + 63948 0.67 0.569658
Target:  5'- cGUUGCuGgUGAUgGCCCGCaggGUCGCCUu -3'
miRNA:   3'- aCAGCG-CgACUA-CGGGUGg--CGGCGGA- -5'
5922 5' -62 NC_001806.1 + 16342 0.67 0.569658
Target:  5'- -cUCGUGCUcGUGUaCCACC-CCGCCUu -3'
miRNA:   3'- acAGCGCGAcUACG-GGUGGcGGCGGA- -5'
5922 5' -62 NC_001806.1 + 96208 0.67 0.559916
Target:  5'- cUGUC-CGCUGGUGgCCAUCGUcgagagCGCCc -3'
miRNA:   3'- -ACAGcGCGACUACgGGUGGCG------GCGGa -5'
5922 5' -62 NC_001806.1 + 73457 0.67 0.559916
Target:  5'- gGcCGgGgUGGccgGCCCgGCCGCCGCCc -3'
miRNA:   3'- aCaGCgCgACUa--CGGG-UGGCGGCGGa -5'
5922 5' -62 NC_001806.1 + 132977 0.67 0.559916
Target:  5'- --aCGCGCUGGUGgUgGCCGCUcCCUc -3'
miRNA:   3'- acaGCGCGACUACgGgUGGCGGcGGA- -5'
5922 5' -62 NC_001806.1 + 4314 0.67 0.55022
Target:  5'- cGUgGCGUcGcgGCcggCCACCGCCGCg- -3'
miRNA:   3'- aCAgCGCGaCuaCG---GGUGGCGGCGga -5'
5922 5' -62 NC_001806.1 + 37888 0.67 0.540577
Target:  5'- gGUCGgGC---UGCUCACUGCCGCg- -3'
miRNA:   3'- aCAGCgCGacuACGGGUGGCGGCGga -5'
5922 5' -62 NC_001806.1 + 24264 0.67 0.540577
Target:  5'- cGUgCGaGCUGcUGCCCGCCGUgcagugCGCCg -3'
miRNA:   3'- aCA-GCgCGACuACGGGUGGCG------GCGGa -5'
5922 5' -62 NC_001806.1 + 73230 0.67 0.540577
Target:  5'- -cUCGCccaGCUGuucgagGCCCACCcaaacgugGCCGCCa -3'
miRNA:   3'- acAGCG---CGACua----CGGGUGG--------CGGCGGa -5'
5922 5' -62 NC_001806.1 + 150677 0.67 0.540577
Target:  5'- cGcCGCGCUGgcGgCCGCCGauggccagucCCGCCc -3'
miRNA:   3'- aCaGCGCGACuaCgGGUGGC----------GGCGGa -5'
5922 5' -62 NC_001806.1 + 106774 0.68 0.530991
Target:  5'- --cCGCGCUGGacGCCU-CCGCCGCg- -3'
miRNA:   3'- acaGCGCGACUa-CGGGuGGCGGCGga -5'
5922 5' -62 NC_001806.1 + 4931 0.68 0.530036
Target:  5'- cGUCcucgccgGCGUcGGUGCCCGCCGCggggGCCc -3'
miRNA:   3'- aCAG-------CGCGaCUACGGGUGGCGg---CGGa -5'
5922 5' -62 NC_001806.1 + 20142 0.68 0.521467
Target:  5'- aUGU-GCGCcgGAgagacccGCCCcCCGCCGCCc -3'
miRNA:   3'- -ACAgCGCGa-CUa------CGGGuGGCGGCGGa -5'
5922 5' -62 NC_001806.1 + 75246 0.68 0.521467
Target:  5'- gGUCGaCGCggUGAcgGCCCugggcGCgGCCGCCa -3'
miRNA:   3'- aCAGC-GCG--ACUa-CGGG-----UGgCGGCGGa -5'
5922 5' -62 NC_001806.1 + 143644 0.68 0.502626
Target:  5'- cGUCcgGCGCgcc-GCCCcCCGCCGCUa -3'
miRNA:   3'- aCAG--CGCGacuaCGGGuGGCGGCGGa -5'
5922 5' -62 NC_001806.1 + 83380 0.68 0.484088
Target:  5'- -uUCGCGCUGGaccgGCCCugucugguCUGCCGCa- -3'
miRNA:   3'- acAGCGCGACUa---CGGGu-------GGCGGCGga -5'
5922 5' -62 NC_001806.1 + 37657 0.68 0.484088
Target:  5'- gGUCGUGCaUGAccUGUgCGCUGCgGCCa -3'
miRNA:   3'- aCAGCGCG-ACU--ACGgGUGGCGgCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.