miRNA display CGI


Results 1 - 20 of 221 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5924 5' -67.6 NC_001806.1 + 2456 0.65 0.431145
Target:  5'- gCCCC-CgGCgGCCccguggggguggGGGUuaucgucgucgucgCCGCCGCCGCa -3'
miRNA:   3'- -GGGGaGgCG-CGG------------UCCG--------------GGCGGCGGUG- -5'
5924 5' -67.6 NC_001806.1 + 76840 0.66 0.42867
Target:  5'- -gCCUCCuacgcgacagggcgcGCGCCugcAGGCgcucuucgacacCCGUCGCCGCg -3'
miRNA:   3'- ggGGAGG---------------CGCGG---UCCG------------GGCGGCGGUG- -5'
5924 5' -67.6 NC_001806.1 + 4193 0.66 0.425385
Target:  5'- gCCCggcgCCGgGCCAcGGCUCcCCGCUgACg -3'
miRNA:   3'- gGGGa---GGCgCGGU-CCGGGcGGCGG-UG- -5'
5924 5' -67.6 NC_001806.1 + 9644 0.66 0.425385
Target:  5'- gCCCUgcuuuuaaCCGCccGCCAGGCaCGCCugcGCCAa -3'
miRNA:   3'- gGGGA--------GGCG--CGGUCCGgGCGG---CGGUg -5'
5924 5' -67.6 NC_001806.1 + 88305 0.66 0.425385
Target:  5'- cCCCCUCgaUG-GCCAGGUuguCCGCCG-UACa -3'
miRNA:   3'- -GGGGAG--GCgCGGUCCG---GGCGGCgGUG- -5'
5924 5' -67.6 NC_001806.1 + 96470 0.66 0.425385
Target:  5'- uUCCC-CCGgcaCGCCuGGGgUCGCgGCCGCg -3'
miRNA:   3'- -GGGGaGGC---GCGG-UCCgGGCGgCGGUG- -5'
5924 5' -67.6 NC_001806.1 + 103162 0.66 0.425385
Target:  5'- gCCgCUgUGCGCUGGGCCUGUaggaCGaCCACc -3'
miRNA:   3'- -GGgGAgGCGCGGUCCGGGCG----GC-GGUG- -5'
5924 5' -67.6 NC_001806.1 + 30582 0.66 0.425385
Target:  5'- cCCCCU-CGCGCCggcagGGGCCaagaggGCgGCgACg -3'
miRNA:   3'- -GGGGAgGCGCGG-----UCCGGg-----CGgCGgUG- -5'
5924 5' -67.6 NC_001806.1 + 114071 0.66 0.425385
Target:  5'- cCCgCCUUCuCGCgGGG-CCGCUGCUGCa -3'
miRNA:   3'- -GG-GGAGGcGCGgUCCgGGCGGCGGUG- -5'
5924 5' -67.6 NC_001806.1 + 148264 0.66 0.425385
Target:  5'- cCCCCUCCccggccCGCCcuuuccucGCCCGCcCGCCu- -3'
miRNA:   3'- -GGGGAGGc-----GCGGuc------CGGGCG-GCGGug -5'
5924 5' -67.6 NC_001806.1 + 116031 0.66 0.425385
Target:  5'- cCCCCaCCGCGCU---CCUcCCGCCACc -3'
miRNA:   3'- -GGGGaGGCGCGGuccGGGcGGCGGUG- -5'
5924 5' -67.6 NC_001806.1 + 150937 0.66 0.419671
Target:  5'- -gCCUCCgccacccgGCGCCGgaaccgagcccggucGGCCCGCUcgcgggcccacgaGCCGCg -3'
miRNA:   3'- ggGGAGG--------CGCGGU---------------CCGGGCGG-------------CGGUG- -5'
5924 5' -67.6 NC_001806.1 + 21495 0.66 0.417236
Target:  5'- aCgCCgCCgGCGaCCGGGCCCcgGCCcgggGCCGCg -3'
miRNA:   3'- -GgGGaGG-CGC-GGUCCGGG--CGG----CGGUG- -5'
5924 5' -67.6 NC_001806.1 + 22879 0.66 0.417236
Target:  5'- gUCCCggggCUG-GCCgGGGCCCGgcCCGCCAn -3'
miRNA:   3'- -GGGGa---GGCgCGG-UCCGGGC--GGCGGUg -5'
5924 5' -67.6 NC_001806.1 + 73048 0.66 0.417236
Target:  5'- cCCCCgUCgGgGCCGcGGUCC-CCGCCu- -3'
miRNA:   3'- -GGGG-AGgCgCGGU-CCGGGcGGCGGug -5'
5924 5' -67.6 NC_001806.1 + 78773 0.66 0.417236
Target:  5'- --aCUCaCGCGCUcgcGGGCCggaCGCCGCCuuGCg -3'
miRNA:   3'- gggGAG-GCGCGG---UCCGG---GCGGCGG--UG- -5'
5924 5' -67.6 NC_001806.1 + 119182 0.66 0.417236
Target:  5'- uCUgCUUgGCGCCGccgcCCCGCCGgCCGCg -3'
miRNA:   3'- -GGgGAGgCGCGGUcc--GGGCGGC-GGUG- -5'
5924 5' -67.6 NC_001806.1 + 42724 0.66 0.417236
Target:  5'- -gCCUCCGCGuCCAGGgUgGCgGCgAUg -3'
miRNA:   3'- ggGGAGGCGC-GGUCCgGgCGgCGgUG- -5'
5924 5' -67.6 NC_001806.1 + 141542 0.66 0.417236
Target:  5'- gCCgUcCCGCGCCcacuuuuccAGGCaaCCGUgGCCGCu -3'
miRNA:   3'- gGGgA-GGCGCGG---------UCCG--GGCGgCGGUG- -5'
5924 5' -67.6 NC_001806.1 + 29874 0.66 0.417236
Target:  5'- cCCCCUCgGCGCCcaucGGGCCacaCGgCAg -3'
miRNA:   3'- -GGGGAGgCGCGG----UCCGGgcgGCgGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.