miRNA display CGI


Results 1 - 20 of 221 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5924 5' -67.6 NC_001806.1 + 23822 0.86 0.015748
Target:  5'- cCCCCUgCGCGCCucGGGCCCGCugCGCCGCa -3'
miRNA:   3'- -GGGGAgGCGCGG--UCCGGGCG--GCGGUG- -5'
5924 5' -67.6 NC_001806.1 + 21576 0.8 0.043477
Target:  5'- gCCUgucgCCGCGCCcgccGGCCCaGCCGCCGCg -3'
miRNA:   3'- gGGGa---GGCGCGGu---CCGGG-CGGCGGUG- -5'
5924 5' -67.6 NC_001806.1 + 79858 0.8 0.043477
Target:  5'- gCCCCUCC-CGCuCGGGCCCcagGCCGCCGg -3'
miRNA:   3'- -GGGGAGGcGCG-GUCCGGG---CGGCGGUg -5'
5924 5' -67.6 NC_001806.1 + 80204 0.79 0.054499
Target:  5'- gCCCCgcccCCGaCGUCAGGCCCGCCccCCACa -3'
miRNA:   3'- -GGGGa---GGC-GCGGUCCGGGCGGc-GGUG- -5'
5924 5' -67.6 NC_001806.1 + 36823 0.78 0.05787
Target:  5'- uUCCCUCCGCccacccaggccguacGCCGGGCCCacccCCGCCAUc -3'
miRNA:   3'- -GGGGAGGCG---------------CGGUCCGGGc---GGCGGUG- -5'
5924 5' -67.6 NC_001806.1 + 20163 0.78 0.064904
Target:  5'- cCCCCgCCGC-CCGGGCCCGCCcCCGg -3'
miRNA:   3'- -GGGGaGGCGcGGUCCGGGCGGcGGUg -5'
5924 5' -67.6 NC_001806.1 + 26365 0.78 0.066539
Target:  5'- gCUCUCUGUcuCCAuGGCCCGCCGCCGCc -3'
miRNA:   3'- gGGGAGGCGc-GGU-CCGGGCGGCGGUG- -5'
5924 5' -67.6 NC_001806.1 + 5575 0.77 0.075327
Target:  5'- aCCCCgccCCGaCGCCggcacgccggGGGCCCGUgGCCGCg -3'
miRNA:   3'- -GGGGa--GGC-GCGG----------UCCGGGCGgCGGUG- -5'
5924 5' -67.6 NC_001806.1 + 23706 0.77 0.07895
Target:  5'- -gCCUCgaucgccgcgcggUGCGCCGGGCCCGCCcccGCCGCc -3'
miRNA:   3'- ggGGAG-------------GCGCGGUCCGGGCGG---CGGUG- -5'
5924 5' -67.6 NC_001806.1 + 132448 0.76 0.081123
Target:  5'- gUUCUCCGCGCCGGcGCUCGUCGCCc- -3'
miRNA:   3'- gGGGAGGCGCGGUC-CGGGCGGCGGug -5'
5924 5' -67.6 NC_001806.1 + 53255 0.76 0.089516
Target:  5'- cCCCCgggCCGCaCCGGGCCC-CCGCCc- -3'
miRNA:   3'- -GGGGa--GGCGcGGUCCGGGcGGCGGug -5'
5924 5' -67.6 NC_001806.1 + 144649 0.76 0.09174
Target:  5'- cCCCCUaaGCGCC-GGCCgGCCGCUg- -3'
miRNA:   3'- -GGGGAggCGCGGuCCGGgCGGCGGug -5'
5924 5' -67.6 NC_001806.1 + 41425 0.75 0.096111
Target:  5'- gCCCagCGCGCCguggucgGGGUgCGCCGCCGCu -3'
miRNA:   3'- gGGGagGCGCGG-------UCCGgGCGGCGGUG- -5'
5924 5' -67.6 NC_001806.1 + 108190 0.75 0.09849
Target:  5'- gCCgCCUCUGCGCUGGGCgugguuaugauuaCCGCCGCCc- -3'
miRNA:   3'- -GG-GGAGGCGCGGUCCG-------------GGCGGCGGug -5'
5924 5' -67.6 NC_001806.1 + 125835 0.75 0.098731
Target:  5'- gCCUgaCGCGCCgcGGGCCCccgGCCGCCGCg -3'
miRNA:   3'- gGGGagGCGCGG--UCCGGG---CGGCGGUG- -5'
5924 5' -67.6 NC_001806.1 + 52832 0.75 0.098731
Target:  5'- gCCC-CCGCGCCucccGGCCCGUaaCGUCGCg -3'
miRNA:   3'- gGGGaGGCGCGGu---CCGGGCG--GCGGUG- -5'
5924 5' -67.6 NC_001806.1 + 26633 0.75 0.101171
Target:  5'- cCCCCgcccgagCCgGCGCCagAGGCCCggcccaccGCCGCCGCc -3'
miRNA:   3'- -GGGGa------GG-CGCGG--UCCGGG--------CGGCGGUG- -5'
5924 5' -67.6 NC_001806.1 + 30172 0.75 0.103667
Target:  5'- gCCCC-CCGCcCCGGGCCCcccgcguccGCgGCCGCg -3'
miRNA:   3'- -GGGGaGGCGcGGUCCGGG---------CGgCGGUG- -5'
5924 5' -67.6 NC_001806.1 + 23416 0.75 0.106222
Target:  5'- cCCCCUCCaCGCCcccgGGGCCCGagcCCGCCc- -3'
miRNA:   3'- -GGGGAGGcGCGG----UCCGGGC---GGCGGug -5'
5924 5' -67.6 NC_001806.1 + 64860 0.75 0.111239
Target:  5'- gCCCCUCCGCGCguccCGGGCCaCGgCgggaucgGCCGCa -3'
miRNA:   3'- -GGGGAGGCGCG----GUCCGG-GCgG-------CGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.