miRNA display CGI


Results 21 - 40 of 221 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5924 5' -67.6 NC_001806.1 + 69828 0.66 0.416426
Target:  5'- aCCCCggccacgccgcugUCCGCGCUucuccccucGGGCa-GCCcaGCCACg -3'
miRNA:   3'- -GGGG-------------AGGCGCGG---------UCCGggCGG--CGGUG- -5'
5924 5' -67.6 NC_001806.1 + 150228 0.66 0.412393
Target:  5'- gCCCCUCC-CGCCGacgcaacaggggcuuGGCCUGCgucggUGCCcCg -3'
miRNA:   3'- -GGGGAGGcGCGGU---------------CCGGGCG-----GCGGuG- -5'
5924 5' -67.6 NC_001806.1 + 6825 0.66 0.409183
Target:  5'- uCCCCUgCUGCGCUcucccGGgCUGCUGCC-Cg -3'
miRNA:   3'- -GGGGA-GGCGCGGu----CCgGGCGGCGGuG- -5'
5924 5' -67.6 NC_001806.1 + 125125 0.66 0.409183
Target:  5'- gCCUCUCCugGUGCUGGuGuCCCGCCuguGUCACa -3'
miRNA:   3'- -GGGGAGG--CGCGGUC-C-GGGCGG---CGGUG- -5'
5924 5' -67.6 NC_001806.1 + 72749 0.66 0.409183
Target:  5'- cCCCCUCCGCcgacCCAcccUCCGCCGacCCACc -3'
miRNA:   3'- -GGGGAGGCGc---GGUcc-GGGCGGC--GGUG- -5'
5924 5' -67.6 NC_001806.1 + 115613 0.66 0.409183
Target:  5'- aCCCgCUCaccuGCGCCAGcgacCCCGCCcuccuCCGCa -3'
miRNA:   3'- -GGG-GAGg---CGCGGUCc---GGGCGGc----GGUG- -5'
5924 5' -67.6 NC_001806.1 + 24402 0.66 0.409183
Target:  5'- aCCCCgaCGCGCCGccgcuGcGCCUguGCCGCgGCg -3'
miRNA:   3'- -GGGGagGCGCGGU-----C-CGGG--CGGCGgUG- -5'
5924 5' -67.6 NC_001806.1 + 52778 0.66 0.409183
Target:  5'- gCCCC-CCGCuGC--GGCCacacaGCCGgCCACg -3'
miRNA:   3'- -GGGGaGGCG-CGguCCGGg----CGGC-GGUG- -5'
5924 5' -67.6 NC_001806.1 + 1900 0.66 0.408383
Target:  5'- aCCC-CCGgGCCGaacacgcGGCCCGagGCCAg -3'
miRNA:   3'- gGGGaGGCgCGGU-------CCGGGCggCGGUg -5'
5924 5' -67.6 NC_001806.1 + 90443 0.66 0.406786
Target:  5'- gCCCCgaaccugacgcgacUuuGCGagCGGGCaCGCCGCCAUu -3'
miRNA:   3'- -GGGG--------------AggCGCg-GUCCGgGCGGCGGUG- -5'
5924 5' -67.6 NC_001806.1 + 88657 0.66 0.401228
Target:  5'- gCCCggggacUCGCG-CAGGgCCGCgGCCAUg -3'
miRNA:   3'- gGGGa-----GGCGCgGUCCgGGCGgCGGUG- -5'
5924 5' -67.6 NC_001806.1 + 127055 0.66 0.401228
Target:  5'- gUUCUCCgGgGCCcGGCCCuGCUGCUGCc -3'
miRNA:   3'- gGGGAGG-CgCGGuCCGGG-CGGCGGUG- -5'
5924 5' -67.6 NC_001806.1 + 44653 0.66 0.401228
Target:  5'- gCCCUCggcguCGCGCCgguAGGgCCGuaGUCACg -3'
miRNA:   3'- gGGGAG-----GCGCGG---UCCgGGCggCGGUG- -5'
5924 5' -67.6 NC_001806.1 + 985 0.66 0.401228
Target:  5'- cCCCCUCC-CGCCcccGCCCccucCCGCCc- -3'
miRNA:   3'- -GGGGAGGcGCGGuc-CGGGc---GGCGGug -5'
5924 5' -67.6 NC_001806.1 + 56213 0.66 0.396502
Target:  5'- aCCCCagCGCGUacacggagaagaagAGGCCCcgaagcgucGCCGCCAa -3'
miRNA:   3'- -GGGGagGCGCGg-------------UCCGGG---------CGGCGGUg -5'
5924 5' -67.6 NC_001806.1 + 125975 0.66 0.393372
Target:  5'- aCCCUCCGCugggGCCcccaGGGUCCGUguuucuCGCCcCa -3'
miRNA:   3'- gGGGAGGCG----CGG----UCCGGGCG------GCGGuG- -5'
5924 5' -67.6 NC_001806.1 + 121398 0.66 0.393372
Target:  5'- aCCCCcCCGgaGCCGGGCgCG-UGCUGCg -3'
miRNA:   3'- -GGGGaGGCg-CGGUCCGgGCgGCGGUG- -5'
5924 5' -67.6 NC_001806.1 + 133404 0.66 0.393372
Target:  5'- uCCUCUCCGCG---GGCCCGCguacaCCACg -3'
miRNA:   3'- -GGGGAGGCGCgguCCGGGCGgc---GGUG- -5'
5924 5' -67.6 NC_001806.1 + 16682 0.66 0.393372
Target:  5'- gCUCCUCUGCGUauuccuccggaUAGGCCaCGUCGuCCGg -3'
miRNA:   3'- -GGGGAGGCGCG-----------GUCCGG-GCGGC-GGUg -5'
5924 5' -67.6 NC_001806.1 + 74003 0.66 0.385617
Target:  5'- gCCCCgcagggggcUCCGCGCCcacccccccuGGGCCCcgagGCCGuUCAg -3'
miRNA:   3'- -GGGG---------AGGCGCGG----------UCCGGG----CGGC-GGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.