miRNA display CGI


Results 1 - 20 of 221 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5924 5' -67.6 NC_001806.1 + 293 0.73 0.14873
Target:  5'- cCCCCgcucCCGCGgccccgccccCCAcGCCCGCCGCgCGCg -3'
miRNA:   3'- -GGGGa---GGCGC----------GGUcCGGGCGGCG-GUG- -5'
5924 5' -67.6 NC_001806.1 + 356 0.69 0.24646
Target:  5'- cCCgCCUUuuuugcgcgcgcgCGCGCCcgcgggGGGCCCggGCUGCCACa -3'
miRNA:   3'- -GG-GGAG-------------GCGCGG------UCCGGG--CGGCGGUG- -5'
5924 5' -67.6 NC_001806.1 + 985 0.66 0.401228
Target:  5'- cCCCCUCC-CGCCcccGCCCccucCCGCCc- -3'
miRNA:   3'- -GGGGAGGcGCGGuc-CGGGc---GGCGGug -5'
5924 5' -67.6 NC_001806.1 + 1329 0.68 0.288033
Target:  5'- uUCCCgCCGCgggggcgugGCCAaGCCCGCCuCCGCc -3'
miRNA:   3'- -GGGGaGGCG---------CGGUcCGGGCGGcGGUG- -5'
5924 5' -67.6 NC_001806.1 + 1382 0.72 0.157421
Target:  5'- cCCCCgCCGcCGCCAgcacggugccgcugcGGCCCGUgGCCGa -3'
miRNA:   3'- -GGGGaGGC-GCGGU---------------CCGGGCGgCGGUg -5'
5924 5' -67.6 NC_001806.1 + 1435 0.69 0.274589
Target:  5'- aUCCCgggCgGCGCCggcggcaGGGCCCccgggccgucgucGUCGCCGCg -3'
miRNA:   3'- -GGGGa--GgCGCGG-------UCCGGG-------------CGGCGGUG- -5'
5924 5' -67.6 NC_001806.1 + 1539 0.74 0.117042
Target:  5'- gUCCCUCCGCGgcccgcgccaCCGGGCCgGgCCGgCGCg -3'
miRNA:   3'- -GGGGAGGCGC----------GGUCCGGgC-GGCgGUG- -5'
5924 5' -67.6 NC_001806.1 + 1709 0.67 0.377963
Target:  5'- uCCCCgaggCCGcCGCCcGGCCguccagCGCCGgCAg -3'
miRNA:   3'- -GGGGa---GGC-GCGGuCCGG------GCGGCgGUg -5'
5924 5' -67.6 NC_001806.1 + 1900 0.66 0.408383
Target:  5'- aCCC-CCGgGCCGaacacgcGGCCCGagGCCAg -3'
miRNA:   3'- gGGGaGGCgCGGU-------CCGGGCggCGGUg -5'
5924 5' -67.6 NC_001806.1 + 2214 0.69 0.281859
Target:  5'- gCCCaggcggCCGUGUCcGGCCCGCacaGCCGg -3'
miRNA:   3'- -GGGga----GGCGCGGuCCGGGCGg--CGGUg -5'
5924 5' -67.6 NC_001806.1 + 2316 0.7 0.220761
Target:  5'- gCCCCgCCGCcgGCCAGGUCC-UCGCCcgGCa -3'
miRNA:   3'- -GGGGaGGCG--CGGUCCGGGcGGCGG--UG- -5'
5924 5' -67.6 NC_001806.1 + 2456 0.65 0.431145
Target:  5'- gCCCC-CgGCgGCCccguggggguggGGGUuaucgucgucgucgCCGCCGCCGCa -3'
miRNA:   3'- -GGGGaGgCG-CGG------------UCCG--------------GGCGGCGGUG- -5'
5924 5' -67.6 NC_001806.1 + 2677 0.67 0.334227
Target:  5'- gCgCCgCCGUgugGCUGGGCCCcgggggcuGCCGCCGCc -3'
miRNA:   3'- -GgGGaGGCG---CGGUCCGGG--------CGGCGGUG- -5'
5924 5' -67.6 NC_001806.1 + 2778 0.68 0.327308
Target:  5'- gCCUgcgCCGCGgC-GGCCCGgggCGCCGCg -3'
miRNA:   3'- gGGGa--GGCGCgGuCCGGGCg--GCGGUG- -5'
5924 5' -67.6 NC_001806.1 + 2977 0.69 0.281859
Target:  5'- gCCCCUCCcgcgGCGCgGGGaggcggcggCgGCCGCCAg -3'
miRNA:   3'- -GGGGAGG----CGCGgUCCg--------GgCGGCGGUg -5'
5924 5' -67.6 NC_001806.1 + 3152 0.66 0.385617
Target:  5'- gCCC-CgGCGaCCAGGCUCacggcgcgcacgGCgGCCACg -3'
miRNA:   3'- gGGGaGgCGC-GGUCCGGG------------CGgCGGUG- -5'
5924 5' -67.6 NC_001806.1 + 3336 0.67 0.337025
Target:  5'- gUCCCUCCggccgcggggggcugGCggGCCGGGCCC-CgGCCAg -3'
miRNA:   3'- -GGGGAGG---------------CG--CGGUCCGGGcGgCGGUg -5'
5924 5' -67.6 NC_001806.1 + 3588 0.67 0.334227
Target:  5'- uCCCCgCgGCGCCguacccggcGGGCaCCGCgCGCuCGCc -3'
miRNA:   3'- -GGGGaGgCGCGG---------UCCG-GGCG-GCG-GUG- -5'
5924 5' -67.6 NC_001806.1 + 3654 0.69 0.269827
Target:  5'- cCCCCUcgucaucugcgCCgGCGCCGGGgcucCCCGCggcccccgucagCGCCGCg -3'
miRNA:   3'- -GGGGA-----------GG-CGCGGUCC----GGGCG------------GCGGUG- -5'
5924 5' -67.6 NC_001806.1 + 3806 0.75 0.112596
Target:  5'- gCCgCCgcgUGCGCCAGGCCCcagccgaagcggccgGCCGCCAUg -3'
miRNA:   3'- -GG-GGag-GCGCGGUCCGGG---------------CGGCGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.