miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5925 3' -56.6 NC_001806.1 + 23956 0.66 0.908247
Target:  5'- -gGggCCGCCGGaGUGGUccgcCGAGcgCGGc -3'
miRNA:   3'- gaCaaGGCGGUC-CGCCA----GCUCuaGCU- -5'
5925 3' -56.6 NC_001806.1 + 74079 0.66 0.902102
Target:  5'- -aGgcCCGUCGGGCGaUCGAGGgcgCGGu -3'
miRNA:   3'- gaCaaGGCGGUCCGCcAGCUCUa--GCU- -5'
5925 3' -56.6 NC_001806.1 + 73118 0.67 0.868028
Target:  5'- -cGggCCGCCggucgccgAGGCGGgCGAGGaCGAc -3'
miRNA:   3'- gaCaaGGCGG--------UCCGCCaGCUCUaGCU- -5'
5925 3' -56.6 NC_001806.1 + 5654 0.67 0.860572
Target:  5'- ---aUCUGCCauGGGCGGggcgCGAGggCGGg -3'
miRNA:   3'- gacaAGGCGG--UCCGCCa---GCUCuaGCU- -5'
5925 3' -56.6 NC_001806.1 + 136785 0.67 0.852137
Target:  5'- cCUGcagCUGCCGGGUGGUCGccucgcuGGAcCGGa -3'
miRNA:   3'- -GACaa-GGCGGUCCGCCAGC-------UCUaGCU- -5'
5925 3' -56.6 NC_001806.1 + 145412 0.67 0.845061
Target:  5'- gCUGgaagaCCGCCAGGgGGUCGGccgguGUCGc -3'
miRNA:   3'- -GACaa---GGCGGUCCgCCAGCUc----UAGCu -5'
5925 3' -56.6 NC_001806.1 + 2717 0.68 0.828794
Target:  5'- ----gCCGcCCAGGgGGUCGGGGcccUCGGc -3'
miRNA:   3'- gacaaGGC-GGUCCgCCAGCUCU---AGCU- -5'
5925 3' -56.6 NC_001806.1 + 92190 0.68 0.828794
Target:  5'- gUGUU-CGCCGGGCagucGGUCGAGGggCGc -3'
miRNA:   3'- gACAAgGCGGUCCG----CCAGCUCUa-GCu -5'
5925 3' -56.6 NC_001806.1 + 67522 0.68 0.828794
Target:  5'- cCUGggCCGUCGcGGCGa--GAGAUCGGg -3'
miRNA:   3'- -GACaaGGCGGU-CCGCcagCUCUAGCU- -5'
5925 3' -56.6 NC_001806.1 + 151270 0.68 0.811827
Target:  5'- -----aCGCCGGGCGGUgGGGGcCGGg -3'
miRNA:   3'- gacaagGCGGUCCGCCAgCUCUaGCU- -5'
5925 3' -56.6 NC_001806.1 + 69600 0.68 0.785202
Target:  5'- ---cUCUGCgAGGCGGUCGGccuGUCGGg -3'
miRNA:   3'- gacaAGGCGgUCCGCCAGCUc--UAGCU- -5'
5925 3' -56.6 NC_001806.1 + 21764 0.7 0.679032
Target:  5'- -cGggCCGUCGGGCGGgguccgUCGAGcgCGGc -3'
miRNA:   3'- gaCaaGGCGGUCCGCC------AGCUCuaGCU- -5'
5925 3' -56.6 NC_001806.1 + 4970 0.71 0.618438
Target:  5'- -cGUcCCGCCGGGCGucGUCGAG-UCGu -3'
miRNA:   3'- gaCAaGGCGGUCCGC--CAGCUCuAGCu -5'
5925 3' -56.6 NC_001806.1 + 38279 0.72 0.598239
Target:  5'- -cGgaCCGCCGGGCGagcggcGUCGAGuAUCGGc -3'
miRNA:   3'- gaCaaGGCGGUCCGC------CAGCUC-UAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.