miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5925 5' -60.4 NC_001806.1 + 94805 0.67 0.655436
Target:  5'- -cCCGGaCgCGGGgGgCGACGGGCAGc -3'
miRNA:   3'- uaGGCUaGgGUCCgCgGCUGCCUGUC- -5'
5925 5' -60.4 NC_001806.1 + 105961 0.67 0.645502
Target:  5'- -gCgGAUUUCuGGCGCCGcCGGACGa -3'
miRNA:   3'- uaGgCUAGGGuCCGCGGCuGCCUGUc -5'
5925 5' -60.4 NC_001806.1 + 144973 0.67 0.635558
Target:  5'- -cCCGGcCCgGGGCcCCGGCGGACc- -3'
miRNA:   3'- uaGGCUaGGgUCCGcGGCUGCCUGuc -5'
5925 5' -60.4 NC_001806.1 + 72010 0.68 0.625611
Target:  5'- -cUCGAguaCCCagGGGCGCgCGGCGGACu- -3'
miRNA:   3'- uaGGCUa--GGG--UCCGCG-GCUGCCUGuc -5'
5925 5' -60.4 NC_001806.1 + 122326 0.68 0.615669
Target:  5'- gGUCUug-CCguGGCGCCGGgGGACGa -3'
miRNA:   3'- -UAGGcuaGGguCCGCGGCUgCCUGUc -5'
5925 5' -60.4 NC_001806.1 + 5855 0.68 0.612688
Target:  5'- -cCCGGUCCCGcccgccGGaCGCCGggaccaacgggacgGCGGGCGGc -3'
miRNA:   3'- uaGGCUAGGGU------CC-GCGGC--------------UGCCUGUC- -5'
5925 5' -60.4 NC_001806.1 + 38054 0.68 0.595827
Target:  5'- cUgCGAcgCCCAcGGCGuCCGccGCGGGCAGg -3'
miRNA:   3'- uAgGCUa-GGGU-CCGC-GGC--UGCCUGUC- -5'
5925 5' -60.4 NC_001806.1 + 130492 0.68 0.595827
Target:  5'- -gCCGG-CCCAGGcCGCCGAgaCGGAgGa -3'
miRNA:   3'- uaGGCUaGGGUCC-GCGGCU--GCCUgUc -5'
5925 5' -60.4 NC_001806.1 + 136155 0.68 0.576085
Target:  5'- --aCGAUCUCGGGaaacaGCCGcUGGACGGg -3'
miRNA:   3'- uagGCUAGGGUCCg----CGGCuGCCUGUC- -5'
5925 5' -60.4 NC_001806.1 + 151540 0.69 0.556494
Target:  5'- -cCCGugggCCCGGGCgGCCGG-GGGCGGc -3'
miRNA:   3'- uaGGCua--GGGUCCG-CGGCUgCCUGUC- -5'
5925 5' -60.4 NC_001806.1 + 66700 0.69 0.54677
Target:  5'- cUCCuGGUCCC-GGCGCUGGCGGuaAGu -3'
miRNA:   3'- uAGG-CUAGGGuCCGCGGCUGCCugUC- -5'
5925 5' -60.4 NC_001806.1 + 100739 0.69 0.5371
Target:  5'- -gCCGGgcgCCCAGGUGCgccCGGACAGc -3'
miRNA:   3'- uaGGCUa--GGGUCCGCGgcuGCCUGUC- -5'
5925 5' -60.4 NC_001806.1 + 92942 0.69 0.5371
Target:  5'- -gCCGGggCCCGcGCGCUGAUGGACGc -3'
miRNA:   3'- uaGGCUa-GGGUcCGCGGCUGCCUGUc -5'
5925 5' -60.4 NC_001806.1 + 2083 0.69 0.527491
Target:  5'- -gCCGGUCgCC-GGCGCUGGCGaGCAGc -3'
miRNA:   3'- uaGGCUAG-GGuCCGCGGCUGCcUGUC- -5'
5925 5' -60.4 NC_001806.1 + 61978 0.69 0.527491
Target:  5'- uUCCGuaaCCAGGuCGUCGGCGGccgACAGg -3'
miRNA:   3'- uAGGCuagGGUCC-GCGGCUGCC---UGUC- -5'
5925 5' -60.4 NC_001806.1 + 29781 0.69 0.52462
Target:  5'- -cCCGcgCCCccccacgcagAGGCGCCGccgcgccccccgugACGGGCGGg -3'
miRNA:   3'- uaGGCuaGGG----------UCCGCGGC--------------UGCCUGUC- -5'
5925 5' -60.4 NC_001806.1 + 82141 0.69 0.517945
Target:  5'- --aUGGUgUCCAGGuCGCCGAgGGACAGc -3'
miRNA:   3'- uagGCUA-GGGUCC-GCGGCUgCCUGUC- -5'
5925 5' -60.4 NC_001806.1 + 37784 0.7 0.50847
Target:  5'- cUCCGGggCCgGGGCGCgGggguccGCGGGCGGg -3'
miRNA:   3'- uAGGCUa-GGgUCCGCGgC------UGCCUGUC- -5'
5925 5' -60.4 NC_001806.1 + 33792 0.7 0.489745
Target:  5'- uGUUCGGUCUCGGuaGCCGGCcGGCGGg -3'
miRNA:   3'- -UAGGCUAGGGUCcgCGGCUGcCUGUC- -5'
5925 5' -60.4 NC_001806.1 + 22333 0.7 0.471348
Target:  5'- uUCCgGAUCUCGGGCGCCG-CGcGCAa -3'
miRNA:   3'- uAGG-CUAGGGUCCGCGGCuGCcUGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.