miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5926 3' -53.8 NC_001806.1 + 24774 0.67 0.935103
Target:  5'- uGGugCUGcgCGGCGAcgacgacggccCGGGGGCCc -3'
miRNA:   3'- cUUugGACa-GCCGCUaua--------GUCCCCGG- -5'
5926 3' -53.8 NC_001806.1 + 115489 0.67 0.934097
Target:  5'- --cGCCUGaucguggagacggguUCGGCGGUGUCcacGGCCa -3'
miRNA:   3'- cuuUGGAC---------------AGCCGCUAUAGuccCCGG- -5'
5926 3' -53.8 NC_001806.1 + 112515 0.67 0.934097
Target:  5'- cGAAGCCgacgugccggugacGUaCGGCGAgaugGUCcugaacGGGGCCa -3'
miRNA:   3'- -CUUUGGa-------------CA-GCCGCUa---UAGu-----CCCCGG- -5'
5926 3' -53.8 NC_001806.1 + 144980 0.67 0.932056
Target:  5'- cGggGCCc--CGGCGGacccaAGGGGCCc -3'
miRNA:   3'- -CuuUGGacaGCCGCUauag-UCCCCGG- -5'
5926 3' -53.8 NC_001806.1 + 65629 0.67 0.932056
Target:  5'- -uGGCC-GUgGGCGAg---AGGGGCCc -3'
miRNA:   3'- cuUUGGaCAgCCGCUauagUCCCCGG- -5'
5926 3' -53.8 NC_001806.1 + 54482 0.67 0.931539
Target:  5'- --cACCUGccgcUCGGUGggGUCccuggguGGGGGCUg -3'
miRNA:   3'- cuuUGGAC----AGCCGCuaUAG-------UCCCCGG- -5'
5926 3' -53.8 NC_001806.1 + 50072 0.67 0.92678
Target:  5'- cGAGCCUcaCGGCGuugcGUCccgucGGGGCCg -3'
miRNA:   3'- cUUUGGAcaGCCGCua--UAGu----CCCCGG- -5'
5926 3' -53.8 NC_001806.1 + 117864 0.67 0.92678
Target:  5'- cGAcGCagcg-GGCGAUGUCggcGGGGGCCg -3'
miRNA:   3'- -CUuUGgacagCCGCUAUAG---UCCCCGG- -5'
5926 3' -53.8 NC_001806.1 + 30831 0.68 0.923496
Target:  5'- gGAAACCUcccUCGGCccccgcgcugcuucuGGgccgCGGGGGCCg -3'
miRNA:   3'- -CUUUGGAc--AGCCG---------------CUaua-GUCCCCGG- -5'
5926 3' -53.8 NC_001806.1 + 76134 0.68 0.921258
Target:  5'- --cACCUGUCGGaaGAcuUgGGGGGCg -3'
miRNA:   3'- cuuUGGACAGCCg-CUauAgUCCCCGg -5'
5926 3' -53.8 NC_001806.1 + 28154 0.68 0.91549
Target:  5'- -cGGCCUGagGGCcgcccccagcgcGAgGUgAGGGGCCg -3'
miRNA:   3'- cuUUGGACagCCG------------CUaUAgUCCCCGG- -5'
5926 3' -53.8 NC_001806.1 + 68574 0.68 0.91549
Target:  5'- -cGGCCUGcgcaccgCGGCGGcc-CuGGGGCCg -3'
miRNA:   3'- cuUUGGACa------GCCGCUauaGuCCCCGG- -5'
5926 3' -53.8 NC_001806.1 + 151288 0.68 0.91549
Target:  5'- cGggGCCgGggggCGGCGg---CGGuGGGCCg -3'
miRNA:   3'- -CuuUGGaCa---GCCGCuauaGUC-CCCGG- -5'
5926 3' -53.8 NC_001806.1 + 77840 0.68 0.909479
Target:  5'- --cACCgca-GGCGAgAUgGGGGGCCu -3'
miRNA:   3'- cuuUGGacagCCGCUaUAgUCCCCGG- -5'
5926 3' -53.8 NC_001806.1 + 70478 0.68 0.903225
Target:  5'- --cGCCUGUauGCGGUgGUCGGGGacacGCCc -3'
miRNA:   3'- cuuUGGACAgcCGCUA-UAGUCCC----CGG- -5'
5926 3' -53.8 NC_001806.1 + 36668 0.68 0.903225
Target:  5'- gGggGCCacGUgGGUuAUGUCcGGGGCCc -3'
miRNA:   3'- -CuuUGGa-CAgCCGcUAUAGuCCCCGG- -5'
5926 3' -53.8 NC_001806.1 + 39195 0.68 0.903225
Target:  5'- -cGGCCuUGUCuGCGuucUUGGGGGCCg -3'
miRNA:   3'- cuUUGG-ACAGcCGCuauAGUCCCCGG- -5'
5926 3' -53.8 NC_001806.1 + 131465 0.68 0.894736
Target:  5'- cGGACCgg-CGGCGcUGUUgccggaacgcaccgAGGGGCCa -3'
miRNA:   3'- cUUUGGacaGCCGCuAUAG--------------UCCCCGG- -5'
5926 3' -53.8 NC_001806.1 + 19254 0.68 0.89
Target:  5'- aAGACCaGUCGGaCG-UGUCGucGGGGUCg -3'
miRNA:   3'- cUUUGGaCAGCC-GCuAUAGU--CCCCGG- -5'
5926 3' -53.8 NC_001806.1 + 56668 0.68 0.89
Target:  5'- uGGGAUCguugggggGUCGGgGGggaCGGGGGCCc -3'
miRNA:   3'- -CUUUGGa-------CAGCCgCUauaGUCCCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.