miRNA display CGI


Results 21 - 40 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5927 3' -62.7 NC_001806.1 + 3291 0.66 0.591643
Target:  5'- gGGGCgCGUCGgcgugcgGCGgcGGCgGGGAagcggGGCc -3'
miRNA:   3'- aCCCG-GCAGCa------CGC--CCGgUCCUa----CCG- -5'
5927 3' -62.7 NC_001806.1 + 91148 0.66 0.591643
Target:  5'- cGuGGCCGcUGUucgaGGGCCAGGAcacGGCc -3'
miRNA:   3'- aC-CCGGCaGCAcg--CCCGGUCCUa--CCG- -5'
5927 3' -62.7 NC_001806.1 + 24512 0.66 0.591643
Target:  5'- cGGGCCGUgcugcCG-GCGcuggacGGCCGGGc-GGCg -3'
miRNA:   3'- aCCCGGCA-----GCaCGC------CCGGUCCuaCCG- -5'
5927 3' -62.7 NC_001806.1 + 57385 0.66 0.59067
Target:  5'- gGuGGCUGUCGUugcggagcaucccGCGccuuGGCCGuGAUGGCa -3'
miRNA:   3'- aC-CCGGCAGCA-------------CGC----CCGGUcCUACCG- -5'
5927 3' -62.7 NC_001806.1 + 133679 0.66 0.59067
Target:  5'- gGcGGCgCGUCGUGCGugucugucccggaGGCgGGGAgucggucGGCg -3'
miRNA:   3'- aC-CCG-GCAGCACGC-------------CCGgUCCUa------CCG- -5'
5927 3' -62.7 NC_001806.1 + 34039 0.66 0.58193
Target:  5'- cGGGCUca-GUGgGGGCgUGGGGUGGg -3'
miRNA:   3'- aCCCGGcagCACgCCCG-GUCCUACCg -5'
5927 3' -62.7 NC_001806.1 + 73437 0.66 0.58193
Target:  5'- gGGGCC--CGgacGCacacccaGGCCGGGGUGGCc -3'
miRNA:   3'- aCCCGGcaGCa--CGc------CCGGUCCUACCG- -5'
5927 3' -62.7 NC_001806.1 + 24342 0.66 0.58193
Target:  5'- cGGGCCG-CGUGUucGGCCcGGG-GGUc -3'
miRNA:   3'- aCCCGGCaGCACGc-CCGGuCCUaCCG- -5'
5927 3' -62.7 NC_001806.1 + 105561 0.66 0.58193
Target:  5'- uUGGGUCGuUUGUucauaaacGCGGGguucggucCCAGGGcUGGCa -3'
miRNA:   3'- -ACCCGGC-AGCA--------CGCCC--------GGUCCU-ACCG- -5'
5927 3' -62.7 NC_001806.1 + 73966 0.66 0.58096
Target:  5'- cGGGCCccUCG-GCGuaaugcccgccccGGCCGGGgcGGCc -3'
miRNA:   3'- aCCCGGc-AGCaCGC-------------CCGGUCCuaCCG- -5'
5927 3' -62.7 NC_001806.1 + 46907 0.67 0.572249
Target:  5'- gGGGCgGccCGUGCGGGUugcuuaaaugCGuGGUGGCg -3'
miRNA:   3'- aCCCGgCa-GCACGCCCG----------GUcCUACCG- -5'
5927 3' -62.7 NC_001806.1 + 52347 0.67 0.572249
Target:  5'- cGGGCCG-CG-GUGGacaGCCAGGA--GCg -3'
miRNA:   3'- aCCCGGCaGCaCGCC---CGGUCCUacCG- -5'
5927 3' -62.7 NC_001806.1 + 94171 0.67 0.571283
Target:  5'- cGGGCgcugcggCGUCGUcugagGcCGGGCCuGGA-GGCc -3'
miRNA:   3'- aCCCG-------GCAGCA-----C-GCCCGGuCCUaCCG- -5'
5927 3' -62.7 NC_001806.1 + 9324 0.67 0.562607
Target:  5'- cGGcGaCCGaCGUG-GGGCCucGGGAUGGg -3'
miRNA:   3'- aCC-C-GGCaGCACgCCCGG--UCCUACCg -5'
5927 3' -62.7 NC_001806.1 + 38086 0.67 0.55301
Target:  5'- cUGGGCUuugGUCgGUGgGGGUUggAGGcgGGCc -3'
miRNA:   3'- -ACCCGG---CAG-CACgCCCGG--UCCuaCCG- -5'
5927 3' -62.7 NC_001806.1 + 64946 0.67 0.55301
Target:  5'- aGGGaccaccggCGUCGgcgccCGGGCCGGGGgucccggGGCa -3'
miRNA:   3'- aCCCg-------GCAGCac---GCCCGGUCCUa------CCG- -5'
5927 3' -62.7 NC_001806.1 + 149694 0.67 0.55301
Target:  5'- gGcGGCCGUUccaGUGUaaGGGUCGGGGgucccccaacaUGGCg -3'
miRNA:   3'- aC-CCGGCAG---CACG--CCCGGUCCU-----------ACCG- -5'
5927 3' -62.7 NC_001806.1 + 23935 0.67 0.543462
Target:  5'- -uGGCCGgCG-GCgGGGCCuGGGggGGCc -3'
miRNA:   3'- acCCGGCaGCaCG-CCCGG-UCCuaCCG- -5'
5927 3' -62.7 NC_001806.1 + 22872 0.67 0.543462
Target:  5'- gGcGGCCGUCccgggGCuGGCCGGGGcccGGCc -3'
miRNA:   3'- aC-CCGGCAGca---CGcCCGGUCCUa--CCG- -5'
5927 3' -62.7 NC_001806.1 + 4822 0.67 0.543462
Target:  5'- gGGGuCCGgggCG-GCGaGGCCGcGGGgucgGGCg -3'
miRNA:   3'- aCCC-GGCa--GCaCGC-CCGGU-CCUa---CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.