miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5931 3' -59.2 NC_001806.1 + 30910 0.66 0.8179
Target:  5'- aCUUCcgGGG-CCGUCCCCgcgggcggCCUAcgCGc -3'
miRNA:   3'- -GAGGuaCCCaGGCAGGGG--------GGGUuaGC- -5'
5931 3' -59.2 NC_001806.1 + 37919 0.66 0.817062
Target:  5'- -gCCAUGGGggcgccggggccgUCCGUCCaCCCCGcccCGg -3'
miRNA:   3'- gaGGUACCC-------------AGGCAGGgGGGGUua-GC- -5'
5931 3' -59.2 NC_001806.1 + 16530 0.66 0.804303
Target:  5'- gUCCAUGGcGUCCaGcucuuccgcgguaaaUCCCguggCCCCAAUCu -3'
miRNA:   3'- gAGGUACC-CAGG-C---------------AGGG----GGGGUUAGc -5'
5931 3' -59.2 NC_001806.1 + 125991 0.66 0.800843
Target:  5'- -cCCA-GGGUCCGuguuUCUCgCCCCAGUgGc -3'
miRNA:   3'- gaGGUaCCCAGGC----AGGG-GGGGUUAgC- -5'
5931 3' -59.2 NC_001806.1 + 119312 0.66 0.800843
Target:  5'- -cCCAUcgucggGGcGUCCGaCCCCCCCA-UCu -3'
miRNA:   3'- gaGGUA------CC-CAGGCaGGGGGGGUuAGc -5'
5931 3' -59.2 NC_001806.1 + 38310 0.66 0.783211
Target:  5'- gCUCC---GGUCCGUCCUCUCCGuggggGUCu -3'
miRNA:   3'- -GAGGuacCCAGGCAGGGGGGGU-----UAGc -5'
5931 3' -59.2 NC_001806.1 + 57641 0.67 0.755825
Target:  5'- -aCCAUacgGGGUuuGggggCCCCCCCGGaaggCGg -3'
miRNA:   3'- gaGGUA---CCCAggCa---GGGGGGGUUa---GC- -5'
5931 3' -59.2 NC_001806.1 + 74812 0.67 0.755825
Target:  5'- aCUCCAggGGGUCCugcgCCCCCUCc---- -3'
miRNA:   3'- -GAGGUa-CCCAGGca--GGGGGGGuuagc -5'
5931 3' -59.2 NC_001806.1 + 18517 0.67 0.74648
Target:  5'- cCUCCugggGGGUCCaGUCaaaCUCCCCAAacUCa -3'
miRNA:   3'- -GAGGua--CCCAGG-CAG---GGGGGGUU--AGc -5'
5931 3' -59.2 NC_001806.1 + 47292 0.67 0.74648
Target:  5'- -cCCAUGc--CCGUCCCCCCCGc--- -3'
miRNA:   3'- gaGGUACccaGGCAGGGGGGGUuagc -5'
5931 3' -59.2 NC_001806.1 + 34159 0.67 0.73704
Target:  5'- cCUCCGUccccUCCGUCCCCCC--GUCGc -3'
miRNA:   3'- -GAGGUAccc-AGGCAGGGGGGguUAGC- -5'
5931 3' -59.2 NC_001806.1 + 43473 0.67 0.71791
Target:  5'- -aCCccGGGUUCGaggCCCCCaCGAUCGa -3'
miRNA:   3'- gaGGuaCCCAGGCa--GGGGGgGUUAGC- -5'
5931 3' -59.2 NC_001806.1 + 65195 0.69 0.599594
Target:  5'- aCUCCGcGGGgCCGacuggaucccccUCCCCCCCGAa-- -3'
miRNA:   3'- -GAGGUaCCCaGGC------------AGGGGGGGUUagc -5'
5931 3' -59.2 NC_001806.1 + 53550 0.71 0.48416
Target:  5'- ----uUGGGUCCGUgccggaCCCCCCCAAcccUCGu -3'
miRNA:   3'- gagguACCCAGGCA------GGGGGGGUU---AGC- -5'
5931 3' -59.2 NC_001806.1 + 120512 0.72 0.474983
Target:  5'- gCUUCAUGGaGgCCGUCCCCUCCAc--- -3'
miRNA:   3'- -GAGGUACC-CaGGCAGGGGGGGUuagc -5'
5931 3' -59.2 NC_001806.1 + 64845 0.72 0.456894
Target:  5'- -gCCggGGGUCCGaaagCCCCUCCGcgCGu -3'
miRNA:   3'- gaGGuaCCCAGGCa---GGGGGGGUuaGC- -5'
5931 3' -59.2 NC_001806.1 + 21009 0.76 0.261048
Target:  5'- gUCCGUGGGUCuCGcCCCCUCCccccAUCGa -3'
miRNA:   3'- gAGGUACCCAG-GCaGGGGGGGu---UAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.