miRNA display CGI


Results 1 - 20 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5932 5' -61 NC_001806.1 + 136766 0.66 0.713534
Target:  5'- -aGCGCGuGaaagaUCGCCGCCUgcaGCUGCCgGg -3'
miRNA:   3'- caCGUGC-C-----GGCGGCGGA---UGAUGGgCg -5'
5932 5' -61 NC_001806.1 + 48958 0.66 0.713534
Target:  5'- uUGCGcCGGCC-CCGUC-GCU-CCCGUc -3'
miRNA:   3'- cACGU-GCCGGcGGCGGaUGAuGGGCG- -5'
5932 5' -61 NC_001806.1 + 69271 0.66 0.713534
Target:  5'- -aGCAgCGGCUGCUgGCuCUGCUGCa-GCa -3'
miRNA:   3'- caCGU-GCCGGCGG-CG-GAUGAUGggCG- -5'
5932 5' -61 NC_001806.1 + 4070 0.66 0.713534
Target:  5'- --aCACGGCCGCCGgg-GC-GCCCGa -3'
miRNA:   3'- cacGUGCCGGCGGCggaUGaUGGGCg -5'
5932 5' -61 NC_001806.1 + 4442 0.66 0.713534
Target:  5'- -gGgGCGG-CGuCCGCCcggggGCUGCCgGCg -3'
miRNA:   3'- caCgUGCCgGC-GGCGGa----UGAUGGgCG- -5'
5932 5' -61 NC_001806.1 + 52453 0.66 0.713534
Target:  5'- gGUuCGgGGCCGCCcugGCCgcggauCUGCuCCGCa -3'
miRNA:   3'- -CAcGUgCCGGCGG---CGGau----GAUG-GGCG- -5'
5932 5' -61 NC_001806.1 + 76313 0.66 0.713534
Target:  5'- gGUGCgcaacgacccgGCGGCgGCCGCCgaGCUugUCcggGCa -3'
miRNA:   3'- -CACG-----------UGCCGgCGGCGGa-UGAugGG---CG- -5'
5932 5' -61 NC_001806.1 + 80021 0.66 0.713534
Target:  5'- -gGCG-GGCCGCagcggCGCCUuacGCgcCCCGCu -3'
miRNA:   3'- caCGUgCCGGCG-----GCGGA---UGauGGGCG- -5'
5932 5' -61 NC_001806.1 + 116625 0.66 0.713534
Target:  5'- cGUGCuguacuacaACGGgaGUCGCCUcucGCUGCUgGCg -3'
miRNA:   3'- -CACG---------UGCCggCGGCGGA---UGAUGGgCG- -5'
5932 5' -61 NC_001806.1 + 24775 0.66 0.707732
Target:  5'- gGUGCugcgcggcgacgacgACGGCCcgggggcccuGCCGCCggcGCcGCCCGg -3'
miRNA:   3'- -CACG---------------UGCCGG----------CGGCGGa--UGaUGGGCg -5'
5932 5' -61 NC_001806.1 + 5507 0.66 0.703852
Target:  5'- -aGCAgCGGagGCCGCCgGCccCCCGCc -3'
miRNA:   3'- caCGU-GCCggCGGCGGaUGauGGGCG- -5'
5932 5' -61 NC_001806.1 + 35522 0.66 0.703852
Target:  5'- -aGCGgGGCCGCucaCGCCaaGCcGCCCaGCg -3'
miRNA:   3'- caCGUgCCGGCG---GCGGa-UGaUGGG-CG- -5'
5932 5' -61 NC_001806.1 + 119183 0.66 0.703852
Target:  5'- cUGcUugGcGCCGCCGCCccGCcGgCCGCg -3'
miRNA:   3'- cAC-GugC-CGGCGGCGGa-UGaUgGGCG- -5'
5932 5' -61 NC_001806.1 + 88990 0.66 0.703852
Target:  5'- -cGcCGCGGCCagaaGCCGCCcg--ACCCGa -3'
miRNA:   3'- caC-GUGCCGG----CGGCGGaugaUGGGCg -5'
5932 5' -61 NC_001806.1 + 94493 0.66 0.694115
Target:  5'- -cGCGCGGCgccacCGCCGCgCUGgaGCgCGUu -3'
miRNA:   3'- caCGUGCCG-----GCGGCG-GAUgaUGgGCG- -5'
5932 5' -61 NC_001806.1 + 84259 0.66 0.694115
Target:  5'- -gGCGCGGgCGCaccggcggagaaUGCCUGCUguguaACCUGUu -3'
miRNA:   3'- caCGUGCCgGCG------------GCGGAUGA-----UGGGCG- -5'
5932 5' -61 NC_001806.1 + 43318 0.66 0.694115
Target:  5'- -gGCccugGCGGUCGUuaaCGCgCUACUuCCCGCc -3'
miRNA:   3'- caCG----UGCCGGCG---GCG-GAUGAuGGGCG- -5'
5932 5' -61 NC_001806.1 + 132348 0.66 0.694115
Target:  5'- uGUGCGaggugGGCCuGCgGCCacgcggGC-ACCCGCa -3'
miRNA:   3'- -CACGUg----CCGG-CGgCGGa-----UGaUGGGCG- -5'
5932 5' -61 NC_001806.1 + 119973 0.66 0.694115
Target:  5'- -cGCugGGCaggcggaGCUGCugCUACgcuuuCCCGCg -3'
miRNA:   3'- caCGugCCGg------CGGCG--GAUGau---GGGCG- -5'
5932 5' -61 NC_001806.1 + 102580 0.66 0.694115
Target:  5'- -aGCGCGGUCGCuauCGUCgGCggcCCCGUg -3'
miRNA:   3'- caCGUGCCGGCG---GCGGaUGau-GGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.