miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5933 3' -56.4 NC_001806.1 + 146070 0.66 0.88831
Target:  5'- gGCCagagGCCAGGUcaguccgGGCG-GGCAggcgcUCGCGGa -3'
miRNA:   3'- -UGGa---CGGUCUA-------CUGCaCCGU-----AGCGCU- -5'
5933 3' -56.4 NC_001806.1 + 50443 0.66 0.874944
Target:  5'- cACCccGCCuuuGcgGACGUGGCG-CGgGAg -3'
miRNA:   3'- -UGGa-CGGu--CuaCUGCACCGUaGCgCU- -5'
5933 3' -56.4 NC_001806.1 + 85369 0.67 0.860026
Target:  5'- uCCUGCgCGGA-GGCGgGGCGU-GCGAc -3'
miRNA:   3'- uGGACG-GUCUaCUGCaCCGUAgCGCU- -5'
5933 3' -56.4 NC_001806.1 + 32194 0.67 0.860026
Target:  5'- gACC-GCCGGggGACGUGGgGUUGg-- -3'
miRNA:   3'- -UGGaCGGUCuaCUGCACCgUAGCgcu -5'
5933 3' -56.4 NC_001806.1 + 52535 0.68 0.801676
Target:  5'- gUCUcGCCGGAcGACGUGGUc-CGCGGg -3'
miRNA:   3'- uGGA-CGGUCUaCUGCACCGuaGCGCU- -5'
5933 3' -56.4 NC_001806.1 + 40805 0.69 0.755233
Target:  5'- cGCCUGCUGGAUGAccCGUGccaccccccGCAUCGUuaGAg -3'
miRNA:   3'- -UGGACGGUCUACU--GCAC---------CGUAGCG--CU- -5'
5933 3' -56.4 NC_001806.1 + 54797 0.69 0.755233
Target:  5'- gGCCaGCCcGGUGGCauuGCGUCGCGAg -3'
miRNA:   3'- -UGGaCGGuCUACUGcacCGUAGCGCU- -5'
5933 3' -56.4 NC_001806.1 + 127758 0.7 0.706067
Target:  5'- -gCUGCCGGGUGcgggccUGUGGCGgccgucUCGCGAu -3'
miRNA:   3'- ugGACGGUCUACu-----GCACCGU------AGCGCU- -5'
5933 3' -56.4 NC_001806.1 + 12827 0.7 0.706067
Target:  5'- ---gGCCGGggGAUGguaaGGCGUCGCGGc -3'
miRNA:   3'- uggaCGGUCuaCUGCa---CCGUAGCGCU- -5'
5933 3' -56.4 NC_001806.1 + 22590 0.7 0.665549
Target:  5'- cGCCgGCgCAGAUGACGagGGgGUCGCc- -3'
miRNA:   3'- -UGGaCG-GUCUACUGCa-CCgUAGCGcu -5'
5933 3' -56.4 NC_001806.1 + 15811 0.72 0.583725
Target:  5'- gGCCUGUCGGAUGAUGcgGGUgaucugacuGUCGCa- -3'
miRNA:   3'- -UGGACGGUCUACUGCa-CCG---------UAGCGcu -5'
5933 3' -56.4 NC_001806.1 + 4281 0.72 0.562464
Target:  5'- gACCcGCCGGGgcugcccggccgUGAagcggccCGUGGCGUCGCGGc -3'
miRNA:   3'- -UGGaCGGUCU------------ACU-------GCACCGUAGCGCU- -5'
5933 3' -56.4 NC_001806.1 + 6218 0.74 0.438425
Target:  5'- gGCC-GUCGGAgcgGACGgcgucGGCAUCGCGAc -3'
miRNA:   3'- -UGGaCGGUCUa--CUGCa----CCGUAGCGCU- -5'
5933 3' -56.4 NC_001806.1 + 36638 0.77 0.308888
Target:  5'- gGCCUGCCAGGUGGCGUugaGGCAguaaGgGGg -3'
miRNA:   3'- -UGGACGGUCUACUGCA---CCGUag--CgCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.