miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5933 5' -58.5 NC_001806.1 + 24307 0.67 0.727643
Target:  5'- ---gGCGGCGCGGgaccugcGCCGCaCGGuGCUGg -3'
miRNA:   3'- agagCGCUGCGUUa------CGGUG-GCC-CGAC- -5'
5933 5' -58.5 NC_001806.1 + 49152 0.68 0.717892
Target:  5'- cCUCGCccGugGCGGacgaGCCAgCGGGCg- -3'
miRNA:   3'- aGAGCG--CugCGUUa---CGGUgGCCCGac -5'
5933 5' -58.5 NC_001806.1 + 22382 0.68 0.717892
Target:  5'- --gCGUGGCGCGggccGUGCCccACCuGGGCUa -3'
miRNA:   3'- agaGCGCUGCGU----UACGG--UGG-CCCGAc -5'
5933 5' -58.5 NC_001806.1 + 146772 0.68 0.70807
Target:  5'- aCUC-CGACGCGGggGCCGUCGGGUa- -3'
miRNA:   3'- aGAGcGCUGCGUUa-CGGUGGCCCGac -5'
5933 5' -58.5 NC_001806.1 + 38136 0.68 0.698186
Target:  5'- gCUCGgGGgaGCAAgacgGUCGCCGGGCc- -3'
miRNA:   3'- aGAGCgCUg-CGUUa---CGGUGGCCCGac -5'
5933 5' -58.5 NC_001806.1 + 73934 0.68 0.698186
Target:  5'- gCUCGCggggucGACGCGGUcucacaGCaCGCCGGGCc- -3'
miRNA:   3'- aGAGCG------CUGCGUUA------CG-GUGGCCCGac -5'
5933 5' -58.5 NC_001806.1 + 79676 0.68 0.698186
Target:  5'- -gUCGCGcGCGCGccGacaCCGCCGGGCa- -3'
miRNA:   3'- agAGCGC-UGCGUuaC---GGUGGCCCGac -5'
5933 5' -58.5 NC_001806.1 + 148012 0.68 0.688248
Target:  5'- gCUCGCGACugGCGGgagccGCCGCCGccGCUGc -3'
miRNA:   3'- aGAGCGCUG--CGUUa----CGGUGGCc-CGAC- -5'
5933 5' -58.5 NC_001806.1 + 119577 0.68 0.668244
Target:  5'- --aCGCaGAUGCGGUGCUGgCGGGuCUGg -3'
miRNA:   3'- agaGCG-CUGCGUUACGGUgGCCC-GAC- -5'
5933 5' -58.5 NC_001806.1 + 62920 0.68 0.668244
Target:  5'- aCUCGCccuCGUAccGCgGCCGGGCg- -3'
miRNA:   3'- aGAGCGcu-GCGUuaCGgUGGCCCGac -5'
5933 5' -58.5 NC_001806.1 + 21940 0.69 0.657189
Target:  5'- --cCGCGACGCcacggGCCcuucacgGCCGGGCa- -3'
miRNA:   3'- agaGCGCUGCGuua--CGG-------UGGCCCGac -5'
5933 5' -58.5 NC_001806.1 + 1810 0.69 0.648126
Target:  5'- --aCGCGguaGCGCAcguUGCCGCCGcGGCa- -3'
miRNA:   3'- agaGCGC---UGCGUu--ACGGUGGC-CCGac -5'
5933 5' -58.5 NC_001806.1 + 107013 0.69 0.644095
Target:  5'- aCUCGCGcGCGCuugccggguugGCCGCCcgcggggccgcGGGCUGu -3'
miRNA:   3'- aGAGCGC-UGCGuua--------CGGUGG-----------CCCGAC- -5'
5933 5' -58.5 NC_001806.1 + 36202 0.69 0.637036
Target:  5'- gCUCuGCcGCGCGggcggccAUGCCGCUGGaGCUGa -3'
miRNA:   3'- aGAG-CGcUGCGU-------UACGGUGGCC-CGAC- -5'
5933 5' -58.5 NC_001806.1 + 21891 0.69 0.627959
Target:  5'- cCUcCGCGGgcCGCAucgagcGCCGCCGGGCc- -3'
miRNA:   3'- aGA-GCGCU--GCGUua----CGGUGGCCCGac -5'
5933 5' -58.5 NC_001806.1 + 4652 0.69 0.627959
Target:  5'- gUCUcCGCGGCgGCuggGCCGgCGGGCg- -3'
miRNA:   3'- -AGA-GCGCUG-CGuuaCGGUgGCCCGac -5'
5933 5' -58.5 NC_001806.1 + 22443 0.69 0.607804
Target:  5'- cCUgGCGcACGCGGcgGCCGCCGuGGCc- -3'
miRNA:   3'- aGAgCGC-UGCGUUa-CGGUGGC-CCGac -5'
5933 5' -58.5 NC_001806.1 + 2737 0.7 0.58772
Target:  5'- cCUCGgcgggcCGGCGCGAcacgGCCACgGGGCg- -3'
miRNA:   3'- aGAGC------GCUGCGUUa---CGGUGgCCCGac -5'
5933 5' -58.5 NC_001806.1 + 22643 0.7 0.58772
Target:  5'- ---aGCG-CGCGGUGcCCGCCGGGUa- -3'
miRNA:   3'- agagCGCuGCGUUAC-GGUGGCCCGac -5'
5933 5' -58.5 NC_001806.1 + 134805 0.7 0.577721
Target:  5'- --aCGCG-CGCGAUGCUgguggcgguaaACCGcGGCUGg -3'
miRNA:   3'- agaGCGCuGCGUUACGG-----------UGGC-CCGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.