miRNA display CGI


Results 81 - 100 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5934 3' -65.3 NC_001806.1 + 29549 0.68 0.361424
Target:  5'- gGGCCcugucgCCCACCCAcccGGAgCCCACCa- -3'
miRNA:   3'- gUCGG------GGGUGGGUc--CCUgGGGUGGcu -5'
5934 3' -65.3 NC_001806.1 + 59004 0.68 0.361424
Target:  5'- -cGCCCCCuccuccggcuGCCCgAGGGACgCguCCGAc -3'
miRNA:   3'- guCGGGGG----------UGGG-UCCCUGgGguGGCU- -5'
5934 3' -65.3 NC_001806.1 + 147149 0.68 0.361424
Target:  5'- -uGUCuCCCuCCCAGGGcaccgacgGCCCCGCCcGAg -3'
miRNA:   3'- guCGG-GGGuGGGUCCC--------UGGGGUGG-CU- -5'
5934 3' -65.3 NC_001806.1 + 9079 0.68 0.376632
Target:  5'- aCGGCCCCCAggCCGGaaGCCCC-CCGGa -3'
miRNA:   3'- -GUCGGGGGUg-GGUCccUGGGGuGGCU- -5'
5934 3' -65.3 NC_001806.1 + 67500 0.68 0.376632
Target:  5'- gGGUCCCgACCCccuGGGGAgCCCuggGCCGu -3'
miRNA:   3'- gUCGGGGgUGGG---UCCCUgGGG---UGGCu -5'
5934 3' -65.3 NC_001806.1 + 41983 0.68 0.395443
Target:  5'- aCGGCCUCCcuGCCCAGGGGCgagggcugcuccgugCUgGCCGc -3'
miRNA:   3'- -GUCGGGGG--UGGGUCCCUG---------------GGgUGGCu -5'
5934 3' -65.3 NC_001806.1 + 46364 0.68 0.392266
Target:  5'- -cGCCCCCccaaaccccgacGCgCCAuGGACCCC-CCGGg -3'
miRNA:   3'- guCGGGGG------------UG-GGUcCCUGGGGuGGCU- -5'
5934 3' -65.3 NC_001806.1 + 28274 0.68 0.387531
Target:  5'- cCGGCCgCCAUgUugGGGGACCCCcacucauacacgggaGCCGGg -3'
miRNA:   3'- -GUCGGgGGUGgG--UCCCUGGGG---------------UGGCU- -5'
5934 3' -65.3 NC_001806.1 + 102977 0.68 0.384396
Target:  5'- -cGCCCCCACCCGccGGcucauCCCCGCgCGc -3'
miRNA:   3'- guCGGGGGUGGGU--CCcu---GGGGUG-GCu -5'
5934 3' -65.3 NC_001806.1 + 121296 0.68 0.384396
Target:  5'- gCGGCCaCCCcCCCGGaGGAaaCCCCcgacccaaccACCGAa -3'
miRNA:   3'- -GUCGG-GGGuGGGUC-CCU--GGGG----------UGGCU- -5'
5934 3' -65.3 NC_001806.1 + 46183 0.68 0.383615
Target:  5'- gGGCCCCCcgaACCCAGcGGGuggcgacuaaggcCCCCGCgGc -3'
miRNA:   3'- gUCGGGGG---UGGGUC-CCU-------------GGGGUGgCu -5'
5934 3' -65.3 NC_001806.1 + 139655 0.68 0.376632
Target:  5'- aCAGUuccaccgaaCCCgGCCCGGGGGacucacuaCCCACCGc -3'
miRNA:   3'- -GUCG---------GGGgUGGGUCCCUg-------GGGUGGCu -5'
5934 3' -65.3 NC_001806.1 + 97808 0.69 0.332312
Target:  5'- -cGCCCCCgccGCCCGGGG-CCagCGCCa- -3'
miRNA:   3'- guCGGGGG---UGGGUCCCuGGg-GUGGcu -5'
5934 3' -65.3 NC_001806.1 + 74885 0.69 0.332312
Target:  5'- gGGCCuCCCugCCGGcgggcuggucGGACCUCcCCGAg -3'
miRNA:   3'- gUCGG-GGGugGGUC----------CCUGGGGuGGCU- -5'
5934 3' -65.3 NC_001806.1 + 24763 0.69 0.334434
Target:  5'- -cGCCCCCccgcuggugcugcgcGgcgacgacgacggCCCGGGGGCCCUGCCGc -3'
miRNA:   3'- guCGGGGG---------------U-------------GGGUCCCUGGGGUGGCu -5'
5934 3' -65.3 NC_001806.1 + 1362 0.69 0.339425
Target:  5'- -cGCCCCCAgcaccUCCAcGGcCCCCGCCGc -3'
miRNA:   3'- guCGGGGGU-----GGGUcCCuGGGGUGGCu -5'
5934 3' -65.3 NC_001806.1 + 90970 0.69 0.339425
Target:  5'- aCGGCCUucgaagCCAgCCAGGGuaagACCCCGCgGGg -3'
miRNA:   3'- -GUCGGG------GGUgGGUCCC----UGGGGUGgCU- -5'
5934 3' -65.3 NC_001806.1 + 10816 0.69 0.339425
Target:  5'- gGGCCgcaCCCAUCCAGGGGuuCCACgGc -3'
miRNA:   3'- gUCGG---GGGUGGGUCCCUggGGUGgCu -5'
5934 3' -65.3 NC_001806.1 + 60402 0.69 0.342302
Target:  5'- uGGaCCCCCccgagucgcucucagACCCGGcGGGCCauCCGCCGGg -3'
miRNA:   3'- gUC-GGGGG---------------UGGGUC-CCUGG--GGUGGCU- -5'
5934 3' -65.3 NC_001806.1 + 27782 0.69 0.332312
Target:  5'- gGGCCCCCAaaUCGGGGGCCggGCCGu -3'
miRNA:   3'- gUCGGGGGUg-GGUCCCUGGggUGGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.