miRNA display CGI


Results 101 - 120 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5934 3' -65.3 NC_001806.1 + 137037 0.69 0.311631
Target:  5'- cCGGCCCgCCgcaccuucagcaACCCGGGGACCgaCCAgCCGu -3'
miRNA:   3'- -GUCGGG-GG------------UGGGUCCCUGG--GGU-GGCu -5'
5934 3' -65.3 NC_001806.1 + 100259 0.69 0.311631
Target:  5'- aGGCCCauaGgCCAcGGACCCCGCCGc -3'
miRNA:   3'- gUCGGGgg-UgGGUcCCUGGGGUGGCu -5'
5934 3' -65.3 NC_001806.1 + 92341 0.69 0.311631
Target:  5'- cCAGCCUaacggCCGgCCAGacGGcCCCCGCCGAg -3'
miRNA:   3'- -GUCGGG-----GGUgGGUC--CCuGGGGUGGCU- -5'
5934 3' -65.3 NC_001806.1 + 79402 0.69 0.330902
Target:  5'- gCGGCCCCgCGCCCcuccuugccccGGACCCCcuuucgcccaccGCCGAu -3'
miRNA:   3'- -GUCGGGG-GUGGGuc---------CCUGGGG------------UGGCU- -5'
5934 3' -65.3 NC_001806.1 + 3125 0.69 0.332312
Target:  5'- gGGUCCCgCggcagcgcgggGCCCAGGG-CCCCGgCGAc -3'
miRNA:   3'- gUCGGGG-G-----------UGGGUCCCuGGGGUgGCU- -5'
5934 3' -65.3 NC_001806.1 + 143663 0.69 0.353982
Target:  5'- -cGCCgcuaaaccccauCCCGCCCccGGGACCCCACa-- -3'
miRNA:   3'- guCGG------------GGGUGGGu-CCCUGGGGUGgcu -5'
5934 3' -65.3 NC_001806.1 + 60402 0.69 0.342302
Target:  5'- uGGaCCCCCccgagucgcucucagACCCGGcGGGCCauCCGCCGGg -3'
miRNA:   3'- gUC-GGGGG---------------UGGGUC-CCUGG--GGUGGCU- -5'
5934 3' -65.3 NC_001806.1 + 10816 0.69 0.339425
Target:  5'- gGGCCgcaCCCAUCCAGGGGuuCCACgGc -3'
miRNA:   3'- gUCGG---GGGUGGGUCCCUggGGUGgCu -5'
5934 3' -65.3 NC_001806.1 + 90970 0.69 0.339425
Target:  5'- aCGGCCUucgaagCCAgCCAGGGuaagACCCCGCgGGg -3'
miRNA:   3'- -GUCGGG------GGUgGGUCCC----UGGGGUGgCU- -5'
5934 3' -65.3 NC_001806.1 + 1362 0.69 0.339425
Target:  5'- -cGCCCCCAgcaccUCCAcGGcCCCCGCCGc -3'
miRNA:   3'- guCGGGGGU-----GGGUcCCuGGGGUGGCu -5'
5934 3' -65.3 NC_001806.1 + 24763 0.69 0.334434
Target:  5'- -cGCCCCCccgcuggugcugcgcGgcgacgacgacggCCCGGGGGCCCUGCCGc -3'
miRNA:   3'- guCGGGGG---------------U-------------GGGUCCCUGGGGUGGCu -5'
5934 3' -65.3 NC_001806.1 + 74885 0.69 0.332312
Target:  5'- gGGCCuCCCugCCGGcgggcuggucGGACCUCcCCGAg -3'
miRNA:   3'- gUCGG-GGGugGGUC----------CCUGGGGuGGCU- -5'
5934 3' -65.3 NC_001806.1 + 97808 0.69 0.332312
Target:  5'- -cGCCCCCgccGCCCGGGG-CCagCGCCa- -3'
miRNA:   3'- guCGGGGG---UGGGUCCCuGGg-GUGGcu -5'
5934 3' -65.3 NC_001806.1 + 27782 0.69 0.332312
Target:  5'- gGGCCCCCAaaUCGGGGGCCggGCCGu -3'
miRNA:   3'- gUCGGGGGUg-GGUCCCUGGggUGGCu -5'
5934 3' -65.3 NC_001806.1 + 22817 0.69 0.332312
Target:  5'- uGGCCgCCugCCGcGGGAUCCUggaggcgcugGCCGAg -3'
miRNA:   3'- gUCGGgGGugGGU-CCCUGGGG----------UGGCU- -5'
5934 3' -65.3 NC_001806.1 + 17226 0.69 0.332312
Target:  5'- gCAGCCCCCGCgUCGGccugucuCCCCGCCGu -3'
miRNA:   3'- -GUCGGGGGUG-GGUCccu----GGGGUGGCu -5'
5934 3' -65.3 NC_001806.1 + 93890 0.7 0.287491
Target:  5'- gGGCCCgcgggaggCCGCCCcgaagagGGGGACCCCggggcucagccagacGCCGGg -3'
miRNA:   3'- gUCGGG--------GGUGGG-------UCCCUGGGG---------------UGGCU- -5'
5934 3' -65.3 NC_001806.1 + 26523 0.7 0.291943
Target:  5'- -cGcCCCCCGCCgGuGGGcCCCCGCCu- -3'
miRNA:   3'- guC-GGGGGUGGgU-CCCuGGGGUGGcu -5'
5934 3' -65.3 NC_001806.1 + 33125 0.7 0.291943
Target:  5'- gGGCCCggaCCGCCgcgguCGGGGGCCCCucgucCCGGg -3'
miRNA:   3'- gUCGGG---GGUGG-----GUCCCUGGGGu----GGCU- -5'
5934 3' -65.3 NC_001806.1 + 128062 0.7 0.2856
Target:  5'- aCGGCCCCCAggUGGGGG-CCCACCa- -3'
miRNA:   3'- -GUCGGGGGUggGUCCCUgGGGUGGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.