Results 121 - 140 of 184 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
5934 | 3' | -65.3 | NC_001806.1 | + | 84995 | 0.7 | 0.2856 |
Target: 5'- -cGCCCUCGCCCAGacGCCCU-CCGAg -3' miRNA: 3'- guCGGGGGUGGGUCccUGGGGuGGCU- -5' |
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5934 | 3' | -65.3 | NC_001806.1 | + | 128062 | 0.7 | 0.2856 |
Target: 5'- aCGGCCCCCAggUGGGGG-CCCACCa- -3' miRNA: 3'- -GUCGGGGGUggGUCCCUgGGGUGGcu -5' |
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5934 | 3' | -65.3 | NC_001806.1 | + | 93890 | 0.7 | 0.287491 |
Target: 5'- gGGCCCgcgggaggCCGCCCcgaagagGGGGACCCCggggcucagccagacGCCGGg -3' miRNA: 3'- gUCGGG--------GGUGGG-------UCCCUGGGG---------------UGGCU- -5' |
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5934 | 3' | -65.3 | NC_001806.1 | + | 26523 | 0.7 | 0.291943 |
Target: 5'- -cGcCCCCCGCCgGuGGGcCCCCGCCu- -3' miRNA: 3'- guC-GGGGGUGGgU-CCCuGGGGUGGcu -5' |
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5934 | 3' | -65.3 | NC_001806.1 | + | 33125 | 0.7 | 0.291943 |
Target: 5'- gGGCCCggaCCGCCgcgguCGGGGGCCCCucgucCCGGg -3' miRNA: 3'- gUCGGG---GGUGG-----GUCCCUGGGGu----GGCU- -5' |
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5934 | 3' | -65.3 | NC_001806.1 | + | 138672 | 0.7 | 0.304297 |
Target: 5'- gCAGCgCCCgggccuggaugcgACCCAGaGGACCCuCGCCu- -3' miRNA: 3'- -GUCGgGGG-------------UGGGUC-CCUGGG-GUGGcu -5' |
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5934 | 3' | -65.3 | NC_001806.1 | + | 99797 | 0.71 | 0.243671 |
Target: 5'- cCGGuCCCCCACCUgAGGGcgauaguGCgCCACCGGc -3' miRNA: 3'- -GUC-GGGGGUGGG-UCCC-------UGgGGUGGCU- -5' |
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5934 | 3' | -65.3 | NC_001806.1 | + | 40502 | 0.71 | 0.242567 |
Target: 5'- aUAGUCCCCACCCAGgcugugcaggacacGGAUCUC-CCGGg -3' miRNA: 3'- -GUCGGGGGUGGGUC--------------CCUGGGGuGGCU- -5' |
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5934 | 3' | -65.3 | NC_001806.1 | + | 112241 | 0.71 | 0.238194 |
Target: 5'- aCGGCCgCCUggccaccagggugGCCCGGGcGACCCUggucGCCGAg -3' miRNA: 3'- -GUCGG-GGG-------------UGGGUCC-CUGGGG----UGGCU- -5' |
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5934 | 3' | -65.3 | NC_001806.1 | + | 106717 | 0.71 | 0.234958 |
Target: 5'- gCGGCCCCCGguaucgggucuuuguCCUAGGGuCCCUgacgcggGCCGAc -3' miRNA: 3'- -GUCGGGGGU---------------GGGUCCCuGGGG-------UGGCU- -5' |
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5934 | 3' | -65.3 | NC_001806.1 | + | 139728 | 0.71 | 0.233354 |
Target: 5'- aUAGCCUaugCCACgCCAGGG-CCUCGCUGAc -3' miRNA: 3'- -GUCGGG---GGUG-GGUCCCuGGGGUGGCU- -5' |
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5934 | 3' | -65.3 | NC_001806.1 | + | 4737 | 0.71 | 0.233354 |
Target: 5'- gCGGCCCCgGgCCGGGG-CCCgguCGCCGGc -3' miRNA: 3'- -GUCGGGGgUgGGUCCCuGGG---GUGGCU- -5' |
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5934 | 3' | -65.3 | NC_001806.1 | + | 52656 | 0.71 | 0.244224 |
Target: 5'- gAGCCCCCGCCCcucccccGACCUCGCCu- -3' miRNA: 3'- gUCGGGGGUGGGucc----CUGGGGUGGcu -5' |
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5934 | 3' | -65.3 | NC_001806.1 | + | 2302 | 0.71 | 0.249815 |
Target: 5'- gCGGCCCCC-CCgAGG--CCCCGCCGc -3' miRNA: 3'- -GUCGGGGGuGGgUCCcuGGGGUGGCu -5' |
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5934 | 3' | -65.3 | NC_001806.1 | + | 143968 | 0.71 | 0.255512 |
Target: 5'- -cGCCCCUGCCCcGGcGACCCCcgGCCc- -3' miRNA: 3'- guCGGGGGUGGGuCC-CUGGGG--UGGcu -5' |
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5934 | 3' | -65.3 | NC_001806.1 | + | 23117 | 0.71 | 0.261314 |
Target: 5'- gGGCCCCgcgCugCCGcGGGACCCgCGCCu- -3' miRNA: 3'- gUCGGGG---GugGGU-CCCUGGG-GUGGcu -5' |
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5934 | 3' | -65.3 | NC_001806.1 | + | 70503 | 0.71 | 0.261314 |
Target: 5'- -cGCCCgaCCGCCUGGGGcccugGCCCC-CCGAg -3' miRNA: 3'- guCGGG--GGUGGGUCCC-----UGGGGuGGCU- -5' |
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5934 | 3' | -65.3 | NC_001806.1 | + | 13799 | 0.71 | 0.261314 |
Target: 5'- aCGGCCCCCaACCUGGcGGcaGCCCCccccauACCGGa -3' miRNA: 3'- -GUCGGGGG-UGGGUC-CC--UGGGG------UGGCU- -5' |
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5934 | 3' | -65.3 | NC_001806.1 | + | 20160 | 0.71 | 0.267224 |
Target: 5'- -cGCCCCCcgccGCCCGGGcccGCCCCcgggGCCGGc -3' miRNA: 3'- guCGGGGG----UGGGUCCc--UGGGG----UGGCU- -5' |
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5934 | 3' | -65.3 | NC_001806.1 | + | 4445 | 0.71 | 0.233354 |
Target: 5'- gCGGCgUCCGCCCGGGGGCU--GCCGGc -3' miRNA: 3'- -GUCGgGGGUGGGUCCCUGGggUGGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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