miRNA display CGI


Results 61 - 80 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5934 3' -65.3 NC_001806.1 + 128062 0.7 0.2856
Target:  5'- aCGGCCCCCAggUGGGGG-CCCACCa- -3'
miRNA:   3'- -GUCGGGGGUggGUCCCUgGGGUGGcu -5'
5934 3' -65.3 NC_001806.1 + 131508 0.7 0.2856
Target:  5'- uGGCCCCCggACCCGGGccguuUCCCACCc- -3'
miRNA:   3'- gUCGGGGG--UGGGUCCcu---GGGGUGGcu -5'
5934 3' -65.3 NC_001806.1 + 149783 0.7 0.279366
Target:  5'- cCGGCCCCuCACCUcgcgcuggGGGcGGCCCUcagGCCGGc -3'
miRNA:   3'- -GUCGGGG-GUGGG--------UCC-CUGGGG---UGGCU- -5'
5934 3' -65.3 NC_001806.1 + 30171 0.7 0.2856
Target:  5'- -cGcCCCCCGCCCcGGG-CCCC-CCGc -3'
miRNA:   3'- guC-GGGGGUGGGuCCCuGGGGuGGCu -5'
5934 3' -65.3 NC_001806.1 + 150113 0.7 0.273241
Target:  5'- gCGGCCCCgucCCCGGGGACCaacCCGGc -3'
miRNA:   3'- -GUCGGGGgu-GGGUCCCUGGgguGGCU- -5'
5934 3' -65.3 NC_001806.1 + 84995 0.7 0.2856
Target:  5'- -cGCCCUCGCCCAGacGCCCU-CCGAg -3'
miRNA:   3'- guCGGGGGUGGGUCccUGGGGuGGCU- -5'
5934 3' -65.3 NC_001806.1 + 26523 0.7 0.291943
Target:  5'- -cGcCCCCCGCCgGuGGGcCCCCGCCu- -3'
miRNA:   3'- guC-GGGGGUGGgU-CCCuGGGGUGGcu -5'
5934 3' -65.3 NC_001806.1 + 33125 0.7 0.291943
Target:  5'- gGGCCCggaCCGCCgcgguCGGGGGCCCCucgucCCGGg -3'
miRNA:   3'- gUCGGG---GGUGG-----GUCCCUGGGGu----GGCU- -5'
5934 3' -65.3 NC_001806.1 + 92341 0.69 0.311631
Target:  5'- cCAGCCUaacggCCGgCCAGacGGcCCCCGCCGAg -3'
miRNA:   3'- -GUCGGG-----GGUgGGUC--CCuGGGGUGGCU- -5'
5934 3' -65.3 NC_001806.1 + 21422 0.69 0.318414
Target:  5'- gCGGCCUcgCCGCCCc-GGACCCCcgccuuucgaGCCGAc -3'
miRNA:   3'- -GUCGGG--GGUGGGucCCUGGGG----------UGGCU- -5'
5934 3' -65.3 NC_001806.1 + 28057 0.69 0.317731
Target:  5'- aAGCCCCgccuacguugcgaCcCCCAGGGACCCU-CCGu -3'
miRNA:   3'- gUCGGGG-------------GuGGGUCCCUGGGGuGGCu -5'
5934 3' -65.3 NC_001806.1 + 93579 0.69 0.325308
Target:  5'- -cGCCgUUcggcgGCCCGGGGGCCCCgggACCGGc -3'
miRNA:   3'- guCGGgGG-----UGGGUCCCUGGGG---UGGCU- -5'
5934 3' -65.3 NC_001806.1 + 137037 0.69 0.311631
Target:  5'- cCGGCCCgCCgcaccuucagcaACCCGGGGACCgaCCAgCCGu -3'
miRNA:   3'- -GUCGGG-GG------------UGGGUCCCUGG--GGU-GGCu -5'
5934 3' -65.3 NC_001806.1 + 51377 0.69 0.325308
Target:  5'- -uGCuCCCCACCCcggAGGGGCUCCuuagcgcgGCCGu -3'
miRNA:   3'- guCG-GGGGUGGG---UCCCUGGGG--------UGGCu -5'
5934 3' -65.3 NC_001806.1 + 27782 0.69 0.332312
Target:  5'- gGGCCCCCAaaUCGGGGGCCggGCCGu -3'
miRNA:   3'- gUCGGGGGUg-GGUCCCUGGggUGGCu -5'
5934 3' -65.3 NC_001806.1 + 3125 0.69 0.332312
Target:  5'- gGGUCCCgCggcagcgcgggGCCCAGGG-CCCCGgCGAc -3'
miRNA:   3'- gUCGGGG-G-----------UGGGUCCCuGGGGUgGCU- -5'
5934 3' -65.3 NC_001806.1 + 96492 0.69 0.325308
Target:  5'- gCGGCCgCgACCCaggcggcgaacGGGGGCCCUGCCa- -3'
miRNA:   3'- -GUCGGgGgUGGG-----------UCCCUGGGGUGGcu -5'
5934 3' -65.3 NC_001806.1 + 57963 0.69 0.318414
Target:  5'- aGGCCCCCgccucucccGCCCGGGcaGCgCCAUCGAg -3'
miRNA:   3'- gUCGGGGG---------UGGGUCCc-UGgGGUGGCU- -5'
5934 3' -65.3 NC_001806.1 + 135255 0.69 0.325308
Target:  5'- -cGCgCCUACCCgGGGGGCCCgaagCACUGAc -3'
miRNA:   3'- guCGgGGGUGGG-UCCCUGGG----GUGGCU- -5'
5934 3' -65.3 NC_001806.1 + 100259 0.69 0.311631
Target:  5'- aGGCCCauaGgCCAcGGACCCCGCCGc -3'
miRNA:   3'- gUCGGGgg-UgGGUcCCUGGGGUGGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.