miRNA display CGI


Results 81 - 100 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5934 3' -65.3 NC_001806.1 + 79402 0.69 0.330902
Target:  5'- gCGGCCCCgCGCCCcuccuugccccGGACCCCcuuucgcccaccGCCGAu -3'
miRNA:   3'- -GUCGGGG-GUGGGuc---------CCUGGGG------------UGGCU- -5'
5934 3' -65.3 NC_001806.1 + 93579 0.69 0.325308
Target:  5'- -cGCCgUUcggcgGCCCGGGGGCCCCgggACCGGc -3'
miRNA:   3'- guCGGgGG-----UGGGUCCCUGGGG---UGGCU- -5'
5934 3' -65.3 NC_001806.1 + 51377 0.69 0.325308
Target:  5'- -uGCuCCCCACCCcggAGGGGCUCCuuagcgcgGCCGu -3'
miRNA:   3'- guCG-GGGGUGGG---UCCCUGGGG--------UGGCu -5'
5934 3' -65.3 NC_001806.1 + 119281 0.69 0.318414
Target:  5'- cCGG-CCCCACgCGGGGGCgCCCGCaGAc -3'
miRNA:   3'- -GUCgGGGGUGgGUCCCUG-GGGUGgCU- -5'
5934 3' -65.3 NC_001806.1 + 28057 0.69 0.317731
Target:  5'- aAGCCCCgccuacguugcgaCcCCCAGGGACCCU-CCGu -3'
miRNA:   3'- gUCGGGG-------------GuGGGUCCCUGGGGuGGCu -5'
5934 3' -65.3 NC_001806.1 + 57963 0.69 0.318414
Target:  5'- aGGCCCCCgccucucccGCCCGGGcaGCgCCAUCGAg -3'
miRNA:   3'- gUCGGGGG---------UGGGUCCc-UGgGGUGGCU- -5'
5934 3' -65.3 NC_001806.1 + 92341 0.69 0.311631
Target:  5'- cCAGCCUaacggCCGgCCAGacGGcCCCCGCCGAg -3'
miRNA:   3'- -GUCGGG-----GGUgGGUC--CCuGGGGUGGCU- -5'
5934 3' -65.3 NC_001806.1 + 135255 0.69 0.325308
Target:  5'- -cGCgCCUACCCgGGGGGCCCgaagCACUGAc -3'
miRNA:   3'- guCGgGGGUGGG-UCCCUGGG----GUGGCU- -5'
5934 3' -65.3 NC_001806.1 + 137037 0.69 0.311631
Target:  5'- cCGGCCCgCCgcaccuucagcaACCCGGGGACCgaCCAgCCGu -3'
miRNA:   3'- -GUCGGG-GG------------UGGGUCCCUGG--GGU-GGCu -5'
5934 3' -65.3 NC_001806.1 + 100259 0.69 0.311631
Target:  5'- aGGCCCauaGgCCAcGGACCCCGCCGc -3'
miRNA:   3'- gUCGGGgg-UgGGUcCCUGGGGUGGCu -5'
5934 3' -65.3 NC_001806.1 + 21422 0.69 0.318414
Target:  5'- gCGGCCUcgCCGCCCc-GGACCCCcgccuuucgaGCCGAc -3'
miRNA:   3'- -GUCGGG--GGUGGGucCCUGGGG----------UGGCU- -5'
5934 3' -65.3 NC_001806.1 + 96492 0.69 0.325308
Target:  5'- gCGGCCgCgACCCaggcggcgaacGGGGGCCCUGCCa- -3'
miRNA:   3'- -GUCGGgGgUGGG-----------UCCCUGGGGUGGcu -5'
5934 3' -65.3 NC_001806.1 + 148784 0.68 0.368975
Target:  5'- -cGCCCCCGCaacugCCGGGGucuuCCUCGCgGGg -3'
miRNA:   3'- guCGGGGGUG-----GGUCCCu---GGGGUGgCU- -5'
5934 3' -65.3 NC_001806.1 + 147149 0.68 0.361424
Target:  5'- -uGUCuCCCuCCCAGGGcaccgacgGCCCCGCCcGAg -3'
miRNA:   3'- guCGG-GGGuGGGUCCC--------UGGGGUGG-CU- -5'
5934 3' -65.3 NC_001806.1 + 59004 0.68 0.361424
Target:  5'- -cGCCCCCuccuccggcuGCCCgAGGGACgCguCCGAc -3'
miRNA:   3'- guCGGGGG----------UGGG-UCCCUGgGguGGCU- -5'
5934 3' -65.3 NC_001806.1 + 29549 0.68 0.361424
Target:  5'- gGGCCcugucgCCCACCCAcccGGAgCCCACCa- -3'
miRNA:   3'- gUCGG------GGGUGGGUc--CCUgGGGUGGcu -5'
5934 3' -65.3 NC_001806.1 + 114160 0.68 0.368975
Target:  5'- -cGCCCCCGgCgAGGaGuGCCCCAgCGAc -3'
miRNA:   3'- guCGGGGGUgGgUCC-C-UGGGGUgGCU- -5'
5934 3' -65.3 NC_001806.1 + 106636 0.68 0.376632
Target:  5'- uGGUCCCCgcgggccagacGCUagaucggguCGGGGACCCCGCgGAc -3'
miRNA:   3'- gUCGGGGG-----------UGG---------GUCCCUGGGGUGgCU- -5'
5934 3' -65.3 NC_001806.1 + 9079 0.68 0.376632
Target:  5'- aCGGCCCCCAggCCGGaaGCCCC-CCGGa -3'
miRNA:   3'- -GUCGGGGGUg-GGUCccUGGGGuGGCU- -5'
5934 3' -65.3 NC_001806.1 + 67500 0.68 0.376632
Target:  5'- gGGUCCCgACCCccuGGGGAgCCCuggGCCGu -3'
miRNA:   3'- gUCGGGGgUGGG---UCCCUgGGG---UGGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.