miRNA display CGI


Results 101 - 120 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5934 3' -65.3 NC_001806.1 + 67500 0.68 0.376632
Target:  5'- gGGUCCCgACCCccuGGGGAgCCCuggGCCGu -3'
miRNA:   3'- gUCGGGGgUGGG---UCCCUgGGG---UGGCu -5'
5934 3' -65.3 NC_001806.1 + 147149 0.68 0.361424
Target:  5'- -uGUCuCCCuCCCAGGGcaccgacgGCCCCGCCcGAg -3'
miRNA:   3'- guCGG-GGGuGGGUCCC--------UGGGGUGG-CU- -5'
5934 3' -65.3 NC_001806.1 + 29549 0.68 0.361424
Target:  5'- gGGCCcugucgCCCACCCAcccGGAgCCCACCa- -3'
miRNA:   3'- gUCGG------GGGUGGGUc--CCUgGGGUGGcu -5'
5934 3' -65.3 NC_001806.1 + 80569 0.68 0.364432
Target:  5'- cCAGCCCCaaaacgggcauguagCACCCGGGGAguaUCCGgCGGu -3'
miRNA:   3'- -GUCGGGG---------------GUGGGUCCCUg--GGGUgGCU- -5'
5934 3' -65.3 NC_001806.1 + 114160 0.68 0.368975
Target:  5'- -cGCCCCCGgCgAGGaGuGCCCCAgCGAc -3'
miRNA:   3'- guCGGGGGUgGgUCC-C-UGGGGUgGCU- -5'
5934 3' -65.3 NC_001806.1 + 148784 0.68 0.368975
Target:  5'- -cGCCCCCGCaacugCCGGGGucuuCCUCGCgGGg -3'
miRNA:   3'- guCGGGGGUG-----GGUCCCu---GGGGUGgCU- -5'
5934 3' -65.3 NC_001806.1 + 9079 0.68 0.376632
Target:  5'- aCGGCCCCCAggCCGGaaGCCCC-CCGGa -3'
miRNA:   3'- -GUCGGGGGUg-GGUCccUGGGGuGGCU- -5'
5934 3' -65.3 NC_001806.1 + 59004 0.68 0.361424
Target:  5'- -cGCCCCCuccuccggcuGCCCgAGGGACgCguCCGAc -3'
miRNA:   3'- guCGGGGG----------UGGG-UCCCUGgGguGGCU- -5'
5934 3' -65.3 NC_001806.1 + 113094 0.67 0.424769
Target:  5'- gCGGCCCCgGCC----GGCCCCGCCGc -3'
miRNA:   3'- -GUCGGGGgUGGguccCUGGGGUGGCu -5'
5934 3' -65.3 NC_001806.1 + 23782 0.67 0.433142
Target:  5'- --aCCCCCACCCccacGGGGCCgCCggggGCCGc -3'
miRNA:   3'- gucGGGGGUGGGu---CCCUGG-GG----UGGCu -5'
5934 3' -65.3 NC_001806.1 + 27071 0.67 0.433142
Target:  5'- aGGCCCgUGCCCGGGcccuGGCCCgcggaGCCGGc -3'
miRNA:   3'- gUCGGGgGUGGGUCC----CUGGGg----UGGCU- -5'
5934 3' -65.3 NC_001806.1 + 52740 0.67 0.441612
Target:  5'- gGGCCCCCGCuuCCGGaugcgaacGACCCgguCGCCGAg -3'
miRNA:   3'- gUCGGGGGUG--GGUCc-------CUGGG---GUGGCU- -5'
5934 3' -65.3 NC_001806.1 + 28681 0.67 0.445026
Target:  5'- gAGCCgCCCGCcauauuugggggacgCCGuGGGACCCCcgacuCCGGu -3'
miRNA:   3'- gUCGG-GGGUG---------------GGU-CCCUGGGGu----GGCU- -5'
5934 3' -65.3 NC_001806.1 + 48368 0.67 0.449313
Target:  5'- aCGGCCCCCccgaccgaugucaGCCUGGGGgacgaGCUCCACUu- -3'
miRNA:   3'- -GUCGGGGG-------------UGGGUCCC-----UGGGGUGGcu -5'
5934 3' -65.3 NC_001806.1 + 144319 0.67 0.449313
Target:  5'- --cCCCCCGCCCGuguGGGuauccggccccccGCCCCgcGCCGGu -3'
miRNA:   3'- gucGGGGGUGGGU---CCC-------------UGGGG--UGGCU- -5'
5934 3' -65.3 NC_001806.1 + 26628 0.67 0.450174
Target:  5'- aCAGCCCCCcgcccgagccgGCgCCAGaGGCCCgGCCc- -3'
miRNA:   3'- -GUCGGGGG-----------UG-GGUCcCUGGGgUGGcu -5'
5934 3' -65.3 NC_001806.1 + 38699 0.67 0.450174
Target:  5'- -cGCCCCCcgggCGGGGcCCCCGCCc- -3'
miRNA:   3'- guCGGGGGugg-GUCCCuGGGGUGGcu -5'
5934 3' -65.3 NC_001806.1 + 73098 0.67 0.450174
Target:  5'- uCGGCaCCCCccgACCCGGccGGGCCgCCggucGCCGAg -3'
miRNA:   3'- -GUCG-GGGG---UGGGUC--CCUGG-GG----UGGCU- -5'
5934 3' -65.3 NC_001806.1 + 4362 0.67 0.433142
Target:  5'- gCGGCCCgCggagGCCgCGGGGGuCCUCGCCGc -3'
miRNA:   3'- -GUCGGGgG----UGG-GUCCCU-GGGGUGGCu -5'
5934 3' -65.3 NC_001806.1 + 109380 0.67 0.424769
Target:  5'- -cGCCCgCGCCCcccGACCCCGCCc- -3'
miRNA:   3'- guCGGGgGUGGGuccCUGGGGUGGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.