miRNA display CGI


Results 41 - 60 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5934 3' -65.3 NC_001806.1 + 73987 0.72 0.222893
Target:  5'- -cGCCCCgGCCgGGGcGGCCCCGCaGGg -3'
miRNA:   3'- guCGGGGgUGGgUCC-CUGGGGUGgCU- -5'
5934 3' -65.3 NC_001806.1 + 72729 0.72 0.228073
Target:  5'- gGGUaCCCCACCCAcGGAUCCCcccuccGCCGAc -3'
miRNA:   3'- gUCG-GGGGUGGGUcCCUGGGG------UGGCU- -5'
5934 3' -65.3 NC_001806.1 + 20292 0.71 0.232821
Target:  5'- cCGGCggCCCCGCCCccuuGGGGCggucccgCCCGCCGGc -3'
miRNA:   3'- -GUCG--GGGGUGGGu---CCCUG-------GGGUGGCU- -5'
5934 3' -65.3 NC_001806.1 + 4445 0.71 0.233354
Target:  5'- gCGGCgUCCGCCCGGGGGCU--GCCGGc -3'
miRNA:   3'- -GUCGgGGGUGGGUCCCUGGggUGGCU- -5'
5934 3' -65.3 NC_001806.1 + 4737 0.71 0.233354
Target:  5'- gCGGCCCCgGgCCGGGG-CCCgguCGCCGGc -3'
miRNA:   3'- -GUCGGGGgUgGGUCCCuGGG---GUGGCU- -5'
5934 3' -65.3 NC_001806.1 + 139728 0.71 0.233354
Target:  5'- aUAGCCUaugCCACgCCAGGG-CCUCGCUGAc -3'
miRNA:   3'- -GUCGGG---GGUG-GGUCCCuGGGGUGGCU- -5'
5934 3' -65.3 NC_001806.1 + 106717 0.71 0.234958
Target:  5'- gCGGCCCCCGguaucgggucuuuguCCUAGGGuCCCUgacgcggGCCGAc -3'
miRNA:   3'- -GUCGGGGGU---------------GGGUCCCuGGGG-------UGGCU- -5'
5934 3' -65.3 NC_001806.1 + 112241 0.71 0.238194
Target:  5'- aCGGCCgCCUggccaccagggugGCCCGGGcGACCCUggucGCCGAg -3'
miRNA:   3'- -GUCGG-GGG-------------UGGGUCC-CUGGGG----UGGCU- -5'
5934 3' -65.3 NC_001806.1 + 40502 0.71 0.242567
Target:  5'- aUAGUCCCCACCCAGgcugugcaggacacGGAUCUC-CCGGg -3'
miRNA:   3'- -GUCGGGGGUGGGUC--------------CCUGGGGuGGCU- -5'
5934 3' -65.3 NC_001806.1 + 99797 0.71 0.243671
Target:  5'- cCGGuCCCCCACCUgAGGGcgauaguGCgCCACCGGc -3'
miRNA:   3'- -GUC-GGGGGUGGG-UCCC-------UGgGGUGGCU- -5'
5934 3' -65.3 NC_001806.1 + 52656 0.71 0.244224
Target:  5'- gAGCCCCCGCCCcucccccGACCUCGCCu- -3'
miRNA:   3'- gUCGGGGGUGGGucc----CUGGGGUGGcu -5'
5934 3' -65.3 NC_001806.1 + 2302 0.71 0.249815
Target:  5'- gCGGCCCCC-CCgAGG--CCCCGCCGc -3'
miRNA:   3'- -GUCGGGGGuGGgUCCcuGGGGUGGCu -5'
5934 3' -65.3 NC_001806.1 + 143968 0.71 0.255512
Target:  5'- -cGCCCCUGCCCcGGcGACCCCcgGCCc- -3'
miRNA:   3'- guCGGGGGUGGGuCC-CUGGGG--UGGcu -5'
5934 3' -65.3 NC_001806.1 + 70503 0.71 0.261314
Target:  5'- -cGCCCgaCCGCCUGGGGcccugGCCCC-CCGAg -3'
miRNA:   3'- guCGGG--GGUGGGUCCC-----UGGGGuGGCU- -5'
5934 3' -65.3 NC_001806.1 + 23117 0.71 0.261314
Target:  5'- gGGCCCCgcgCugCCGcGGGACCCgCGCCu- -3'
miRNA:   3'- gUCGGGG---GugGGU-CCCUGGG-GUGGcu -5'
5934 3' -65.3 NC_001806.1 + 13799 0.71 0.261314
Target:  5'- aCGGCCCCCaACCUGGcGGcaGCCCCccccauACCGGa -3'
miRNA:   3'- -GUCGGGGG-UGGGUC-CC--UGGGG------UGGCU- -5'
5934 3' -65.3 NC_001806.1 + 20160 0.71 0.267224
Target:  5'- -cGCCCCCcgccGCCCGGGcccGCCCCcgggGCCGGc -3'
miRNA:   3'- guCGGGGG----UGGGUCCc--UGGGG----UGGCU- -5'
5934 3' -65.3 NC_001806.1 + 143604 0.71 0.269618
Target:  5'- cCGGuCCCCCGuucCCCGGGGgccguuaucuccagcGCCCCGuCCGGc -3'
miRNA:   3'- -GUC-GGGGGU---GGGUCCC---------------UGGGGU-GGCU- -5'
5934 3' -65.3 NC_001806.1 + 150113 0.7 0.273241
Target:  5'- gCGGCCCCgucCCCGGGGACCaacCCGGc -3'
miRNA:   3'- -GUCGGGGgu-GGGUCCCUGGgguGGCU- -5'
5934 3' -65.3 NC_001806.1 + 149783 0.7 0.279366
Target:  5'- cCGGCCCCuCACCUcgcgcuggGGGcGGCCCUcagGCCGGc -3'
miRNA:   3'- -GUCGGGG-GUGGG--------UCC-CUGGGG---UGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.