miRNA display CGI


Results 81 - 100 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5934 3' -65.3 NC_001806.1 + 3125 0.69 0.332312
Target:  5'- gGGUCCCgCggcagcgcgggGCCCAGGG-CCCCGgCGAc -3'
miRNA:   3'- gUCGGGG-G-----------UGGGUCCCuGGGGUgGCU- -5'
5934 3' -65.3 NC_001806.1 + 22817 0.69 0.332312
Target:  5'- uGGCCgCCugCCGcGGGAUCCUggaggcgcugGCCGAg -3'
miRNA:   3'- gUCGGgGGugGGU-CCCUGGGG----------UGGCU- -5'
5934 3' -65.3 NC_001806.1 + 17226 0.69 0.332312
Target:  5'- gCAGCCCCCGCgUCGGccugucuCCCCGCCGu -3'
miRNA:   3'- -GUCGGGGGUG-GGUCccu----GGGGUGGCu -5'
5934 3' -65.3 NC_001806.1 + 97808 0.69 0.332312
Target:  5'- -cGCCCCCgccGCCCGGGG-CCagCGCCa- -3'
miRNA:   3'- guCGGGGG---UGGGUCCCuGGg-GUGGcu -5'
5934 3' -65.3 NC_001806.1 + 74885 0.69 0.332312
Target:  5'- gGGCCuCCCugCCGGcgggcuggucGGACCUCcCCGAg -3'
miRNA:   3'- gUCGG-GGGugGGUC----------CCUGGGGuGGCU- -5'
5934 3' -65.3 NC_001806.1 + 27782 0.69 0.332312
Target:  5'- gGGCCCCCAaaUCGGGGGCCggGCCGu -3'
miRNA:   3'- gUCGGGGGUg-GGUCCCUGGggUGGCu -5'
5934 3' -65.3 NC_001806.1 + 24763 0.69 0.334434
Target:  5'- -cGCCCCCccgcuggugcugcgcGgcgacgacgacggCCCGGGGGCCCUGCCGc -3'
miRNA:   3'- guCGGGGG---------------U-------------GGGUCCCUGGGGUGGCu -5'
5934 3' -65.3 NC_001806.1 + 90970 0.69 0.339425
Target:  5'- aCGGCCUucgaagCCAgCCAGGGuaagACCCCGCgGGg -3'
miRNA:   3'- -GUCGGG------GGUgGGUCCC----UGGGGUGgCU- -5'
5934 3' -65.3 NC_001806.1 + 1362 0.69 0.339425
Target:  5'- -cGCCCCCAgcaccUCCAcGGcCCCCGCCGc -3'
miRNA:   3'- guCGGGGGU-----GGGUcCCuGGGGUGGCu -5'
5934 3' -65.3 NC_001806.1 + 10816 0.69 0.339425
Target:  5'- gGGCCgcaCCCAUCCAGGGGuuCCACgGc -3'
miRNA:   3'- gUCGG---GGGUGGGUCCCUggGGUGgCu -5'
5934 3' -65.3 NC_001806.1 + 60402 0.69 0.342302
Target:  5'- uGGaCCCCCccgagucgcucucagACCCGGcGGGCCauCCGCCGGg -3'
miRNA:   3'- gUC-GGGGG---------------UGGGUC-CCUGG--GGUGGCU- -5'
5934 3' -65.3 NC_001806.1 + 143663 0.69 0.353982
Target:  5'- -cGCCgcuaaaccccauCCCGCCCccGGGACCCCACa-- -3'
miRNA:   3'- guCGG------------GGGUGGGu-CCCUGGGGUGgcu -5'
5934 3' -65.3 NC_001806.1 + 29549 0.68 0.361424
Target:  5'- gGGCCcugucgCCCACCCAcccGGAgCCCACCa- -3'
miRNA:   3'- gUCGG------GGGUGGGUc--CCUgGGGUGGcu -5'
5934 3' -65.3 NC_001806.1 + 59004 0.68 0.361424
Target:  5'- -cGCCCCCuccuccggcuGCCCgAGGGACgCguCCGAc -3'
miRNA:   3'- guCGGGGG----------UGGG-UCCCUGgGguGGCU- -5'
5934 3' -65.3 NC_001806.1 + 147149 0.68 0.361424
Target:  5'- -uGUCuCCCuCCCAGGGcaccgacgGCCCCGCCcGAg -3'
miRNA:   3'- guCGG-GGGuGGGUCCC--------UGGGGUGG-CU- -5'
5934 3' -65.3 NC_001806.1 + 80569 0.68 0.364432
Target:  5'- cCAGCCCCaaaacgggcauguagCACCCGGGGAguaUCCGgCGGu -3'
miRNA:   3'- -GUCGGGG---------------GUGGGUCCCUg--GGGUgGCU- -5'
5934 3' -65.3 NC_001806.1 + 114160 0.68 0.368975
Target:  5'- -cGCCCCCGgCgAGGaGuGCCCCAgCGAc -3'
miRNA:   3'- guCGGGGGUgGgUCC-C-UGGGGUgGCU- -5'
5934 3' -65.3 NC_001806.1 + 148784 0.68 0.368975
Target:  5'- -cGCCCCCGCaacugCCGGGGucuuCCUCGCgGGg -3'
miRNA:   3'- guCGGGGGUG-----GGUCCCu---GGGGUGgCU- -5'
5934 3' -65.3 NC_001806.1 + 106636 0.68 0.376632
Target:  5'- uGGUCCCCgcgggccagacGCUagaucggguCGGGGACCCCGCgGAc -3'
miRNA:   3'- gUCGGGGG-----------UGG---------GUCCCUGGGGUGgCU- -5'
5934 3' -65.3 NC_001806.1 + 67500 0.68 0.376632
Target:  5'- gGGUCCCgACCCccuGGGGAgCCCuggGCCGu -3'
miRNA:   3'- gUCGGGGgUGGG---UCCCUgGGG---UGGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.