miRNA display CGI


Results 61 - 80 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5934 3' -65.3 NC_001806.1 + 4362 0.67 0.433142
Target:  5'- gCGGCCCgCggagGCCgCGGGGGuCCUCGCCGc -3'
miRNA:   3'- -GUCGGGgG----UGG-GUCCCU-GGGGUGGCu -5'
5934 3' -65.3 NC_001806.1 + 29151 0.67 0.424769
Target:  5'- gAGCCCCC-CCCgcgAGGaaGACCCCGgCa- -3'
miRNA:   3'- gUCGGGGGuGGG---UCC--CUGGGGUgGcu -5'
5934 3' -65.3 NC_001806.1 + 83766 0.67 0.424769
Target:  5'- gCAGUCUgCCACCC-GGGcCCUCAUCGGa -3'
miRNA:   3'- -GUCGGG-GGUGGGuCCCuGGGGUGGCU- -5'
5934 3' -65.3 NC_001806.1 + 89887 0.67 0.424769
Target:  5'- -uGCCUCU-CgCAGGGACCCCgcguuGCCGGc -3'
miRNA:   3'- guCGGGGGuGgGUCCCUGGGG-----UGGCU- -5'
5934 3' -65.3 NC_001806.1 + 95336 0.67 0.424769
Target:  5'- gGGCCCCgACgacgaCGGGGACCgugUCGCCGu -3'
miRNA:   3'- gUCGGGGgUGg----GUCCCUGG---GGUGGCu -5'
5934 3' -65.3 NC_001806.1 + 109380 0.67 0.424769
Target:  5'- -cGCCCgCGCCCcccGACCCCGCCc- -3'
miRNA:   3'- guCGGGgGUGGGuccCUGGGGUGGcu -5'
5934 3' -65.3 NC_001806.1 + 113094 0.67 0.424769
Target:  5'- gCGGCCCCgGCC----GGCCCCGCCGc -3'
miRNA:   3'- -GUCGGGGgUGGguccCUGGGGUGGCu -5'
5934 3' -65.3 NC_001806.1 + 85304 0.67 0.416492
Target:  5'- -cGCCCCCcUCCA-GGACCUCuugGCCGGg -3'
miRNA:   3'- guCGGGGGuGGGUcCCUGGGG---UGGCU- -5'
5934 3' -65.3 NC_001806.1 + 4128 0.67 0.416492
Target:  5'- -cGCCCCCcagagGCCCGGGcGGCUgucgcccaggCCGCCGu -3'
miRNA:   3'- guCGGGGG-----UGGGUCC-CUGG----------GGUGGCu -5'
5934 3' -65.3 NC_001806.1 + 20771 0.67 0.416492
Target:  5'- cCGGCCCCUgggacuauaugaGCCCGaGGACgCC-CCGAu -3'
miRNA:   3'- -GUCGGGGG------------UGGGUcCCUGgGGuGGCU- -5'
5934 3' -65.3 NC_001806.1 + 70276 0.67 0.416492
Target:  5'- gCAGCCCCC-CCC----GCCCC-CCGAg -3'
miRNA:   3'- -GUCGGGGGuGGGucccUGGGGuGGCU- -5'
5934 3' -65.3 NC_001806.1 + 41416 0.67 0.414029
Target:  5'- gAGCCgCCUGCCCagcgcgccguggucGGGGugCgCCGCCGc -3'
miRNA:   3'- gUCGG-GGGUGGG--------------UCCCugG-GGUGGCu -5'
5934 3' -65.3 NC_001806.1 + 31768 0.67 0.408315
Target:  5'- gAGCCgCgGCCCGGGcuGCCugaCCACCGAu -3'
miRNA:   3'- gUCGGgGgUGGGUCCc-UGG---GGUGGCU- -5'
5934 3' -65.3 NC_001806.1 + 78231 0.67 0.408315
Target:  5'- aGGCCCuCCgACCCGGGG-CCUCAuguUCGGc -3'
miRNA:   3'- gUCGGG-GG-UGGGUCCCuGGGGU---GGCU- -5'
5934 3' -65.3 NC_001806.1 + 22626 0.67 0.408315
Target:  5'- -cGCCgCCGCaCCGGGcgagcgcgcgGugCCCGCCGGg -3'
miRNA:   3'- guCGGgGGUG-GGUCC----------CugGGGUGGCU- -5'
5934 3' -65.3 NC_001806.1 + 2712 0.67 0.407503
Target:  5'- -cGCCagCCGCCCAGGGggucgggGCCCUcggcggGCCGGc -3'
miRNA:   3'- guCGGg-GGUGGGUCCC-------UGGGG------UGGCU- -5'
5934 3' -65.3 NC_001806.1 + 41983 0.68 0.395443
Target:  5'- aCGGCCUCCcuGCCCAGGGGCgagggcugcuccgugCUgGCCGc -3'
miRNA:   3'- -GUCGGGGG--UGGGUCCCUG---------------GGgUGGCu -5'
5934 3' -65.3 NC_001806.1 + 46364 0.68 0.392266
Target:  5'- -cGCCCCCccaaaccccgacGCgCCAuGGACCCC-CCGGg -3'
miRNA:   3'- guCGGGGG------------UG-GGUcCCUGGGGuGGCU- -5'
5934 3' -65.3 NC_001806.1 + 28274 0.68 0.387531
Target:  5'- cCGGCCgCCAUgUugGGGGACCCCcacucauacacgggaGCCGGg -3'
miRNA:   3'- -GUCGGgGGUGgG--UCCCUGGGG---------------UGGCU- -5'
5934 3' -65.3 NC_001806.1 + 121296 0.68 0.384396
Target:  5'- gCGGCCaCCCcCCCGGaGGAaaCCCCcgacccaaccACCGAa -3'
miRNA:   3'- -GUCGG-GGGuGGGUC-CCU--GGGG----------UGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.