miRNA display CGI


Results 41 - 60 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5934 3' -65.3 NC_001806.1 + 23117 0.71 0.261314
Target:  5'- gGGCCCCgcgCugCCGcGGGACCCgCGCCu- -3'
miRNA:   3'- gUCGGGG---GugGGU-CCCUGGG-GUGGcu -5'
5934 3' -65.3 NC_001806.1 + 23444 0.73 0.180658
Target:  5'- -cGCCCCCGCCCAGcccgcGGcGCCCCggGCCGc -3'
miRNA:   3'- guCGGGGGUGGGUC-----CC-UGGGG--UGGCu -5'
5934 3' -65.3 NC_001806.1 + 23514 0.66 0.503347
Target:  5'- -cGCCggCCCGCCgAGGG-CCCCgACCc- -3'
miRNA:   3'- guCGG--GGGUGGgUCCCuGGGG-UGGcu -5'
5934 3' -65.3 NC_001806.1 + 23558 0.66 0.493384
Target:  5'- gCAGCCCCCgggGCCCAgccacacGGcGGCgCCCGCgGc -3'
miRNA:   3'- -GUCGGGGG---UGGGU-------CC-CUG-GGGUGgCu -5'
5934 3' -65.3 NC_001806.1 + 23782 0.67 0.433142
Target:  5'- --aCCCCCACCCccacGGGGCCgCCggggGCCGc -3'
miRNA:   3'- gucGGGGGUGGGu---CCCUGG-GG----UGGCu -5'
5934 3' -65.3 NC_001806.1 + 24763 0.69 0.334434
Target:  5'- -cGCCCCCccgcuggugcugcgcGgcgacgacgacggCCCGGGGGCCCUGCCGc -3'
miRNA:   3'- guCGGGGG---------------U-------------GGGUCCCUGGGGUGGCu -5'
5934 3' -65.3 NC_001806.1 + 26400 0.66 0.476393
Target:  5'- gCGGCCCCCGccgccCCCGGccgcccGGGCCCacgggCGCCGu -3'
miRNA:   3'- -GUCGGGGGU-----GGGUC------CCUGGG-----GUGGCu -5'
5934 3' -65.3 NC_001806.1 + 26523 0.7 0.291943
Target:  5'- -cGcCCCCCGCCgGuGGGcCCCCGCCu- -3'
miRNA:   3'- guC-GGGGGUGGgU-CCCuGGGGUGGcu -5'
5934 3' -65.3 NC_001806.1 + 26628 0.67 0.450174
Target:  5'- aCAGCCCCCcgcccgagccgGCgCCAGaGGCCCgGCCc- -3'
miRNA:   3'- -GUCGGGGG-----------UG-GGUCcCUGGGgUGGcu -5'
5934 3' -65.3 NC_001806.1 + 26686 0.72 0.214815
Target:  5'- cCGGCCCCCaccgcccggcguggGCCCGGGGGgcggggcugaccccUCCCACCc- -3'
miRNA:   3'- -GUCGGGGG--------------UGGGUCCCU--------------GGGGUGGcu -5'
5934 3' -65.3 NC_001806.1 + 27071 0.67 0.433142
Target:  5'- aGGCCCgUGCCCGGGcccuGGCCCgcggaGCCGGc -3'
miRNA:   3'- gUCGGGgGUGGGUCC----CUGGGg----UGGCU- -5'
5934 3' -65.3 NC_001806.1 + 27782 0.69 0.332312
Target:  5'- gGGCCCCCAaaUCGGGGGCCggGCCGu -3'
miRNA:   3'- gUCGGGGGUg-GGUCCCUGGggUGGCu -5'
5934 3' -65.3 NC_001806.1 + 28057 0.69 0.317731
Target:  5'- aAGCCCCgccuacguugcgaCcCCCAGGGACCCU-CCGu -3'
miRNA:   3'- gUCGGGG-------------GuGGGUCCCUGGGGuGGCu -5'
5934 3' -65.3 NC_001806.1 + 28127 0.66 0.503347
Target:  5'- gAGCCCCgC-CCCGGaGcGAguaCCCGCCGGc -3'
miRNA:   3'- gUCGGGG-GuGGGUC-C-CUg--GGGUGGCU- -5'
5934 3' -65.3 NC_001806.1 + 28274 0.68 0.387531
Target:  5'- cCGGCCgCCAUgUugGGGGACCCCcacucauacacgggaGCCGGg -3'
miRNA:   3'- -GUCGGgGGUGgG--UCCCUGGGG---------------UGGCU- -5'
5934 3' -65.3 NC_001806.1 + 28527 0.73 0.198479
Target:  5'- gGGCCCggggUCGCCguGGGACCCC-CUGAc -3'
miRNA:   3'- gUCGGG----GGUGGguCCCUGGGGuGGCU- -5'
5934 3' -65.3 NC_001806.1 + 28681 0.67 0.445026
Target:  5'- gAGCCgCCCGCcauauuugggggacgCCGuGGGACCCCcgacuCCGGu -3'
miRNA:   3'- gUCGG-GGGUG---------------GGU-CCCUGGGGu----GGCU- -5'
5934 3' -65.3 NC_001806.1 + 29151 0.67 0.424769
Target:  5'- gAGCCCCC-CCCgcgAGGaaGACCCCGgCa- -3'
miRNA:   3'- gUCGGGGGuGGG---UCC--CUGGGGUgGcu -5'
5934 3' -65.3 NC_001806.1 + 29549 0.68 0.361424
Target:  5'- gGGCCcugucgCCCACCCAcccGGAgCCCACCa- -3'
miRNA:   3'- gUCGG------GGGUGGGUc--CCUgGGGUGGcu -5'
5934 3' -65.3 NC_001806.1 + 30171 0.7 0.2856
Target:  5'- -cGcCCCCCGCCCcGGG-CCCC-CCGc -3'
miRNA:   3'- guC-GGGGGUGGGuCCCuGGGGuGGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.